View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10500_low_31 (Length: 289)

Name: NF10500_low_31
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10500_low_31
NF10500_low_31
[»] chr5 (3 HSPs)
chr5 (46-278)||(38690332-38690563)
chr5 (129-204)||(38703302-38703371)
chr5 (1-44)||(4789521-4789564)
[»] chr7 (3 HSPs)
chr7 (1-45)||(29060743-29060787)
chr7 (1-45)||(42607081-42607125)
chr7 (1-45)||(24995852-24995896)
[»] chr3 (5 HSPs)
chr3 (1-45)||(51421679-51421723)
chr3 (5-45)||(33455789-33455829)
chr3 (1-45)||(49161812-49161856)
chr3 (1-45)||(8652810-8652854)
chr3 (1-45)||(33968181-33968225)
[»] chr1 (5 HSPs)
chr1 (1-45)||(38931314-38931358)
chr1 (1-45)||(48835101-48835145)
chr1 (1-45)||(2687731-2687775)
chr1 (1-45)||(4640528-4640572)
chr1 (1-45)||(4641766-4641810)
[»] chr4 (2 HSPs)
chr4 (1-45)||(25970106-25970150)
chr4 (1-45)||(34154794-34154838)
[»] chr2 (4 HSPs)
chr2 (1-45)||(23876067-23876111)
chr2 (1-45)||(7868145-7868189)
chr2 (1-45)||(34617653-34617697)
chr2 (1-45)||(36390957-36391001)
[»] chr8 (1 HSPs)
chr8 (5-47)||(37562293-37562335)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 46 - 278
Target Start/End: Complemental strand, 38690563 - 38690332
Alignment:
Q  46 gtcccaatcctctcattgatagaggttgtttgaacaaagccatgcatgtgatcacgtgattgttttgcatgaatnnnnnnnntatactcaaaaggaaaga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         |||||||||||||||||    
T  38690563 gtcccaatcctctcattgatagaggttgtttgaacaaagccatgcatgtgaccacgtgattgttttgcatgaataaaaaaaaaatactcaaaaggaaaga 38690464  T
Q  146 aagcaggtttaatttannnnnnnngtagtttgtaaatttgatgaagactttagtcatatcagaaaatggaaaatgtattatattgactcatggaa---tg 242  Q
    |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||    
T  38690463 aagcaggtttaattt----tttttgtagtttgtaaatttgatgaagactttagtcatatcagaaaatggaaaatgcattatattgactcatggaatattg 38690368  T
Q  243 gagtgggtgcagaagcacatgtcttgtgatgtccat 278  Q
    ||||||||||||||||||||||||||||||||||||    
T  38690367 gagtgggtgcagaagcacatgtcttgtgatgtccat 38690332  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 38703371 - 38703302
Alignment:
Q  129 atactcaaaaggaaagaaagcaggtttaatttannnnnnnngtagtttgtaaatttgatgaagactttagtcatat 204  Q
    ||||||||||||||||||||||||||||||||         || |||||||||||||||||| |||||||||||||    
T  38703371 atactcaaaaggaaagaaagcaggtttaattt------ttggtggtttgtaaatttgatgaaaactttagtcatat 38703302  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4789564 - 4789521
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccac 44  Q
    |||||||||||||||||| |||| |||| |||||||||||||||    
T  4789564 tcccatggtgggaaacaactcccctttcccatgctaaaccccac 4789521  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29060743 - 29060787
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  29060743 tcccatggtgggaaacaattcccctttcccatgctaaaccccacc 29060787  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42607125 - 42607081
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  42607125 tcccatggtgggaaacaattcccctttcccatgctaaaccccacc 42607081  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24995896 - 24995852
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    |||||||||||||||||| |||| |||| ||| ||||||||||||    
T  24995896 tcccatggtgggaaacaactcccctttcccattctaaaccccacc 24995852  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51421679 - 51421723
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  51421679 tcccatggtgggaaacaattcccctttctcatgctaaaccccacc 51421723  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 33455789 - 33455829
Alignment:
Q  5 atggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  33455789 atggtgggaaacaattcccctttcccatgctaaaccccacc 33455829  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49161812 - 49161856
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  49161812 tcccatggtgggaaacaattcccctttcccatgctaaacctcacc 49161856  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8652854 - 8652810
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    |||||||||||||| | |||||| |||| ||||||||||||||||    
T  8652854 tcccatggtgggaaccgattcccctttcccatgctaaaccccacc 8652810  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33968225 - 33968181
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    |||||||||||||||||| | || |||| ||||||||||||||||    
T  33968225 tcccatggtgggaaacaagttccctttcccatgctaaaccccacc 33968181  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38931358 - 38931314
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  38931358 tcccatggtgggaaacaattcccctttctcatgctaaaccccacc 38931314  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48835101 - 48835145
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||    
T  48835101 tcccatggtggaaaacaattcccctttcccatgctaaaccccacc 48835145  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2687731 - 2687775
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||||||||||||  | |||| ||||||||||||||||    
T  2687731 tcccatggtgggaaacaattatcctttcccatgctaaaccccacc 2687775  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4640572 - 4640528
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||||||||||||||| |||  |||||||||| |||||    
T  4640572 tcccatggtgggaaacaattcccctttaccatgctaaactccacc 4640528  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4641766 - 4641810
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    |||| |||||||||||||||||| |||| |||||||||| |||||    
T  4641766 tcccttggtgggaaacaattcccctttcccatgctaaactccacc 4641810  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25970150 - 25970106
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||    
T  25970150 tcccatggtgggaaacaactcccctttcccatgctaaaccccacc 25970106  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34154838 - 34154794
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    |||||||||||||||||| |  |||||| ||||||||||||||||    
T  34154838 tcccatggtgggaaacaagtttcttttcccatgctaaaccccacc 34154794  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23876067 - 23876111
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||    
T  23876067 tcccatggtgggaaacaactcccatttcccatgctaaaccccacc 23876111  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7868145 - 7868189
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    |||||||||||||||||| |||| |||| ||||||||| ||||||    
T  7868145 tcccatggtgggaaacaactcccctttctcatgctaaatcccacc 7868189  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34617697 - 34617653
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    ||||||||||||||||||||  | |||| ||||||||||||||||    
T  34617697 tcccatggtgggaaacaattatcctttcccatgctaaaccccacc 34617653  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36391001 - 36390957
Alignment:
Q  1 tcccatggtgggaaacaattcccttttcacatgctaaaccccacc 45  Q
    |||||||||||||||||| | || |||| ||||||||||||||||    
T  36391001 tcccatggtgggaaacaacttccctttcccatgctaaaccccacc 36390957  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 37562335 - 37562293
Alignment:
Q  5 atggtgggaaacaattcccttttcacatgctaaaccccaccgt 47  Q
    ||||||||||||||||| | |||| ||||||||||||||||||    
T  37562335 atggtgggaaacaattctcctttcccatgctaaaccccaccgt 37562293  T

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