View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_36 (Length: 251)
Name: NF10500_low_36
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 33711856 - 33711620
Alignment:
| Q |
2 |
aaacgttactgattaaaagcatgcatcaatagaaaatatttattgaaaatcacaatatcacttaatttgttaaatatttatgagatttacataattacat |
101 |
Q |
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| T |
33711856 |
aaacgttactgattaaa-gcatgcatcaatagaaaatatttattgaaaatcacaatatcacttaatttgttaaatatttatgagatttacataattacat |
33711758 |
T |
|
| Q |
102 |
atatcaaaagccacaaattaagnnnnnnnnnnnnnnnngtgcccatcaaaattcattgattaaagatttacacgttatagaaaactgttgcataaaaaca |
201 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33711757 |
atatcaaaagccacaaattaag-aaaaaaaaataaaaagtgcccatcaaaattcattgattaaagatttacacgttatagaaaactgttgcataaaaaca |
33711659 |
T |
|
| Q |
202 |
atattaaatgttgcatgtaaaaaataatacttgacctat |
240 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
33711658 |
atattaaatgttgcatgtaaaaaataatatttgacctat |
33711620 |
T |
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