View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10500_low_38 (Length: 250)
Name: NF10500_low_38
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 33081872 - 33082120
Alignment:
| Q |
1 |
tcaaaagggttgcataattcgcgacatatatcatgggattgnnnnnnntaaacataaattgataaatgtaagcaagtataccaaactagacattaaattt |
100 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33081872 |
tcaaaagggctgcataatttgcgacatatatcatgggattgaaaagaagaaacataaattgataaatgtaagcaagtataccaaactagacattaaattt |
33081971 |
T |
|
| Q |
101 |
atagacgnnnnnnnnctt---gcgtttgataaaaaagcaaagcaaaggcacaatatcaataaatttcacagccaagttagccagaaataccattaagaaa |
197 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33081972 |
atagacgttttttttcttcttgcgtttgataaaaaagcaaagcaaaggcacaaaatcaataaatttcacagccaagttagccagaaataccattaagaaa |
33082071 |
T |
|
| Q |
198 |
tccttccttacgacgttcaaatccaggctataatagtttcttctctctc |
246 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
33082072 |
tccttccttacgaccttcaaatccaggctataatagcttcttctctctc |
33082120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 33091781 - 33091980
Alignment:
| Q |
50 |
aaacataaattgataaatgtaagcaagtataccaaactagacattaaatttatagacgnnnnnnnnctt---gcgtttgataaaaaagcaaagcaaaggc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
33091781 |
aaacataaattgataaatgtaagcaagtataccaaactagacattaaatttatagacgttttttttcttcttgcgtttgataaaaaagcaaagcaaaggc |
33091880 |
T |
|
| Q |
147 |
acaatatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctc |
246 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
33091881 |
acaaaatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagcttcttctctctc |
33091980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 33099277 - 33099476
Alignment:
| Q |
50 |
aaacataaattgataaatgtaagcaagtataccaaactagacattaaatttatagacgnnnnnnnnctt---gcgtttgataaaaaagcaaagcaaaggc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
33099277 |
aaacataaattgataaatgtaagcaagtataccaaactagacattaaatttatagacgttttttttcttcttgcgtttgataaaaaagcaaagcaaaggc |
33099376 |
T |
|
| Q |
147 |
acaatatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctc |
246 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
33099377 |
acaaaatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagcttcttctctctc |
33099476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33072199 - 33072304
Alignment:
| Q |
1 |
tcaaaagggttgcataattcgcgacatatatcatgggattgnnnnnnntaaacataaattgataaatgtaagcaagtataccaaactagacatt-aaatt |
99 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
33072199 |
tcaaaaggggtgcataattcttaacatatatcatgggattgaaaaaaagaaacataaattgataaatataagcaagtataccaaaccagacattgaaatt |
33072298 |
T |
|
| Q |
100 |
tataga |
105 |
Q |
| |
|
|||||| |
|
|
| T |
33072299 |
tataga |
33072304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 33072318 - 33072379
Alignment:
| Q |
185 |
taccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctc |
246 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
33072318 |
taccattacgaaaaccttccttacgaccttcaaatccaggccgtaatagcttcttctctctc |
33072379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University