View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_40 (Length: 250)
Name: NF10500_low_40
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42205301 - 42205539
Alignment:
| Q |
1 |
ccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205301 |
ccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttag |
42205400 |
T |
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| Q |
101 |
aagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205401 |
aagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcat |
42205500 |
T |
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| Q |
201 |
acactcattcaacaatgatcattatttttctatctctct |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
42205501 |
acactcattcaacaatgatcattatttttctatctctct |
42205539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42214169 - 42214407
Alignment:
| Q |
1 |
ccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214169 |
ccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttag |
42214268 |
T |
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| Q |
101 |
aagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214269 |
aagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcat |
42214368 |
T |
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| Q |
201 |
acactcattcaacaatgatcattatttttctatctctct |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
42214369 |
acactcattcaacaatgatcattatttttctatctctct |
42214407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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