View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_41 (Length: 247)
Name: NF10500_low_41
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_41 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 48922518 - 48922764
Alignment:
| Q |
1 |
tcgatcctttcatgaagcgtcatacaaactacaaagcaggagctttgtttcatgtaacaaaaatcttgagatagaatcctacaagtttatcagagttgta |
100 |
Q |
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| T |
48922518 |
tcgatccttccatgaagcgtcatacaaactacaaagcaggagctttgtttcatgtaacaaaaatcttgagatagaatcctacaagtttatcagagttgta |
48922617 |
T |
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| Q |
101 |
taaggaaagagataataaatgcaaaagggatttctagataagcatttcatatataatggacactaattaacgaagtttacattgataatgattagattat |
200 |
Q |
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| T |
48922618 |
aaaggaaagagataataaatgcagaagggatttctagataagcatttcatatataatggacactaattaacgaagtttacattgataatgattagattat |
48922717 |
T |
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| Q |
201 |
tggtgaacaaatatatacatgttcaagtgctaaactaagatgagtta |
247 |
Q |
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| T |
48922718 |
tggtgaacaaatatatacatgttcaagtgctaaactaagatgagtta |
48922764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 48876422 - 48876384
Alignment:
| Q |
209 |
aaatatatacatgttcaagtgctaaactaagatgagtta |
247 |
Q |
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| T |
48876422 |
aaatacatgcatgttcaagtgctaaactaagatgagtta |
48876384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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