View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_43 (Length: 246)
Name: NF10500_low_43
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 38368160 - 38367970
Alignment:
| Q |
1 |
tttgatcaaacatgaattccagaagttctaggattttgtatgggannnnnnnnnnnncctcccaaaggctagatatgtgtgaagatgtgatgttattgac |
100 |
Q |
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| T |
38368160 |
tttgatcaaacatgaattccagaagttctaggattttgtatgggatttttcttttttcctcccaaaggctagatatgggtgaagatgtgatgttattgac |
38368061 |
T |
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| Q |
101 |
aaaatgcaagacattttaccttgtgtgcctaaatgatccaagcaaacaaatgttgaaaaatttggtacatactacggtaatttgtagttct |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38368060 |
aaaatgcaagacattttaccttgtgtgcctaaatgatccaagcaaacaaatgttgaaaaatttggtacatactacggtaatttgtagttct |
38367970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 38367821 - 38367770
Alignment:
| Q |
188 |
ttctattctacaaatctaatgagttgtttgctcaacaattatggtccctttg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38367821 |
ttctattctacaaatctaatgagttgtttgctcaacaattatggtccctttg |
38367770 |
T |
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