View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10500_low_46 (Length: 241)

Name: NF10500_low_46
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10500_low_46
NF10500_low_46
[»] chr1 (2 HSPs)
chr1 (1-224)||(42205055-42205278)
chr1 (1-224)||(42213923-42214146)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42205278 - 42205055
Alignment:
Q  1 taattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtgaacatagctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205278 taattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtgaacatagctc 42205179  T
Q  101 tttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgatgcctcaaatatatcaaaaggaataagtagacagccatctga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205178 tttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgatgcctcaaatatatcaaaaggaataagtagacagccatctga 42205079  T
Q  201 gatgcctccattagatgcctttct 224  Q
    ||||||||||||||||||||||||    
T  42205078 gatgcctccattagatgcctttct 42205055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42214146 - 42213923
Alignment:
Q  1 taattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtgaacatagctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42214146 taattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtgaacatagctc 42214047  T
Q  101 tttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgatgcctcaaatatatcaaaaggaataagtagacagccatctga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42214046 tttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgatgcctcaaatatatcaaaaggaataagtagacagccatctga 42213947  T
Q  201 gatgcctccattagatgcctttct 224  Q
    ||||||||||||||||||||||||    
T  42213946 gatgcctccattagatgcctttct 42213923  T

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