View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_5 (Length: 468)
Name: NF10500_low_5
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_5 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 7242 - 7527
Alignment:
| Q |
13 |
agagcaaaatcacatttgacagaaaacatgatcgttgtggccggaaatagatggcttctttcatcaacattgttttgtttttgtagaaaaagtttattct |
112 |
Q |
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| T |
7242 |
agagcaaaatcacatttgacagaaaacatgatcgttgtggccggaaatagatggcttctttcatcaacattgttttgtttttgtagaaaaagtttattct |
7341 |
T |
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| Q |
113 |
ttttaaagagcatctccaccaaggattattgagatgaaagttttctaaagcgagttatttagattttgttca-nnnnnnncgaaggaagattatgttcat |
211 |
Q |
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| T |
7342 |
ttttaaagagcatctccaccaaggattattgagatgaaagttttctaaagcgagttatttagattttgttcattttttttcgaaggaagattatgttcat |
7441 |
T |
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| Q |
212 |
tatgctctaaagaaatgtaaactaatttatttacatataatactaccaaccatgtgttggtaggcacaaaataagtgttcaaatga |
297 |
Q |
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| T |
7442 |
tatgctctaaagaaatgtaaactaatttatttacatataatactaccaaccatgtgttggtaggcactaaataagtgttcaaatga |
7527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 329 - 454
Target Start/End: Original strand, 7538 - 7665
Alignment:
| Q |
329 |
agacggattgtcaaatatcacatgaaaaccta--cacacaaatgaatttaggcatttttcaattgagtcaaaacctgctgataatacttttctttatgtg |
426 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
7538 |
agactgattgtcaaatatcacatgaaaacctatacacacagatgaatttaggcatttttcaattgagtcaaaacctgcggataatacttttctttgtgtg |
7637 |
T |
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| Q |
427 |
ttaatcttccggttaccaggaatgagat |
454 |
Q |
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| T |
7638 |
ttaatcttccggttaccaggaatgagat |
7665 |
T |
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