View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10500_low_50 (Length: 238)
Name: NF10500_low_50
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52392908 - 52392691
Alignment:
| Q |
1 |
tggataaattaacattattcaatgcagaattataagtggcaaaataaaattagcgcccatataccaaccaaaccaacaattacattcgtgtcaccttnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
52392908 |
tggataaattaacattattcaatgcagaattataagtggcaaaataaaattagcgcccatataccaaccaa-----caattacattcgggtcacctgaaa |
52392814 |
T |
|
| Q |
101 |
nnnnnnnnnnnnngaaattacattcatggatatgttacatttatgtaaagggtggaattagatttagatagatcattcagatcaagcactaattccatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52392813 |
acaaaacaaaaaagaaattacattcatggatatgttacatttatgtaaagggtggaattagatttagatagatcattcagatcaagcactaattccatgt |
52392714 |
T |
|
| Q |
201 |
cctgtgtttaattttgatgatcc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
52392713 |
cctgtgtttaattttgatgatcc |
52392691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University