View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10500_low_52 (Length: 235)
Name: NF10500_low_52
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_52 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 42742306 - 42742114
Alignment:
| Q |
25 |
taaacaagggtgagacaatgaggagagatcataataccttaactttgtccatgaagaactcagctgcaacaagtttcctctgttgtgcccaactttggcc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42742306 |
taaacaagggtgagacaatgaggagagatcataataccttaactttgtccatgaagaactcagctgcaacaagtttcctctgttgtgcccaactatggcc |
42742207 |
T |
|
| Q |
125 |
attggctctcaaaatgccattgccaagcattggcgcaagtttgttagttatataagaaggtttacccaaattcaaagtgatacactggttcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42742206 |
attggctctcaaaatgccattgccaagcattggcgcaagtttgttagttatataagaaggtttacccaaattcaaagtaatacactggttcat |
42742114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University