View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10500_low_6 (Length: 445)
Name: NF10500_low_6
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 25 - 440
Target Start/End: Complemental strand, 14176865 - 14176444
Alignment:
| Q |
25 |
agtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttatccttatgagtttgaacttcat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176865 |
agtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttatccttatgagtttgaacttcat |
14176766 |
T |
|
| Q |
125 |
cgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta------tgatgatctctgcttgatctcctgagctgaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
14176765 |
cgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttgatctcctgagatgaga |
14176666 |
T |
|
| Q |
219 |
tgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttct |
318 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
14176665 |
tgttgtggattgctctccatcttgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttct |
14176566 |
T |
|
| Q |
319 |
gtagcaactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcat |
418 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176565 |
gtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcat |
14176466 |
T |
|
| Q |
419 |
gaaacactacatctctgcttct |
440 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
14176465 |
gaaacactacatctctgcttct |
14176444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 25 - 440
Target Start/End: Original strand, 28609010 - 28609432
Alignment:
| Q |
25 |
agtttcacaagttcataagtatcattttt-ctgcaatgaatccatctcttcttgcattgctttcatccattggattttatccttatgagtttgaacttca |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28609010 |
agtttcacaagttcataagtatcattttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttatccttatgagtttgaacttca |
28609109 |
T |
|
| Q |
124 |
tcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta------tgatgatctctgcttgatctcctgagctgag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| |
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|
| T |
28609110 |
tcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttaatctcctgagatgag |
28609209 |
T |
|
| Q |
218 |
atgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttc |
317 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
28609210 |
atgttgtggattgctctccatcttgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttc |
28609309 |
T |
|
| Q |
318 |
tgtagcaactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctca |
417 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
28609310 |
tgtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctta |
28609409 |
T |
|
| Q |
418 |
tgaaacactacatctctgcttct |
440 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28609410 |
tgaaacactacatctctgcttct |
28609432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 25 - 440
Target Start/End: Complemental strand, 12933595 - 12933174
Alignment:
| Q |
25 |
agtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttatccttatgagtttgaacttcat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12933595 |
agtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttatctttatgagtttgaacttcat |
12933496 |
T |
|
| Q |
125 |
cgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta------tgatgatctctgcttgatctcctgagctgaga |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
12933495 |
cgaaactgtccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttgatctcctgagatgaga |
12933396 |
T |
|
| Q |
219 |
tgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttct |
318 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
12933395 |
tgttgtggattgctctccatcttgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttct |
12933296 |
T |
|
| Q |
319 |
gtagcaactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcat |
418 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
12933295 |
gtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagtagaatctgacatagtttcttgctcat |
12933196 |
T |
|
| Q |
419 |
gaaacactacatctctgcttct |
440 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
12933195 |
gaaacactacatctctgcttct |
12933174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 28 - 440
Target Start/End: Complemental strand, 15299382 - 15298964
Alignment:
| Q |
28 |
ttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttatccttatgagtttgaacttcatcga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
15299382 |
ttcacaagttcataagtatcatttttctgcaaggaatccatctcttcttacattgctttcatccattggattttatccttatgagtttgaacttcatcaa |
15299283 |
T |
|
| Q |
128 |
aactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta------tgatgatctctgcttgatctcctgagctgagatgt |
221 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15299282 |
aacttttcggctccccctcaacagtgatgagaatgtactccaaactagggtacctggtagatggatgatgatctctgcttgatctcttgagctgagatgt |
15299183 |
T |
|
| Q |
222 |
tggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgta |
321 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
15299182 |
tgggcattgctctccatcctgaacatcttcctcatcaccatcttcaactactaactcaccattaaccccagggtcttcatcaagatctcccccttctgtg |
15299083 |
T |
|
| Q |
322 |
gcaactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaa |
421 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299082 |
gcaactcttacaggaggagtggtaactgtaagatcaaccttaccataacgtttaggtgtttctggaatagcagaatctgacatagtttcttgctcatgaa |
15298983 |
T |
|
| Q |
422 |
acactacatctctgcttct |
440 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15298982 |
acactacatctctgcttct |
15298964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 224 - 424
Target Start/End: Original strand, 38994875 - 38995074
Alignment:
| Q |
224 |
gggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagc |
323 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||||||||||||| | ||||||||||||||||||||||| || |||||||| |||||||||| | || |
|
|
| T |
38994875 |
gggattgctctccatcctatcctttttcgtcatcaccatcttcaattgttggctcaccatcaaccctagggttttaatcaagatctcccccttctttggc |
38994974 |
T |
|
| Q |
324 |
aactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaac |
423 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| |||||||||||| | ||||||||||| |||||| | ||| || |||||||||||||||||||||| |
|
|
| T |
38994975 |
aactcttataggaggagtggttagtgtaaggtcaaccttaccaccgtgcttaggtgtttcaggaatagta-aatttgtcatagtttcttgctcatgaaac |
38995073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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