View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_61 (Length: 214)
Name: NF10500_low_61
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_61 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 35160621 - 35160768
Alignment:
| Q |
69 |
gttgattatgactgtgaatagaatttttacttgattagtcacaataaggagacaatgtttattgnnnnnnn--ttaagaaattcaataccatttggttgc |
166 |
Q |
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| T |
35160621 |
gttgattataactgtgaatagaatttttacttgattagtcacaataaggagacaatgtttattgaaaaaaaaattaagaaattcaataccatttggttgc |
35160720 |
T |
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| Q |
167 |
caaagttttcggttagctcaccaaagtaattttatagagcaatgctat |
214 |
Q |
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| T |
35160721 |
caaagttttcggttagctcaccaaagtaattttatagagcaatgctat |
35160768 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 44748471 - 44748353
Alignment:
| Q |
85 |
aatagaatttttacttgattagtcacaataaggagacaatgtttattgnnnnnnn-----ttaagaaattcaataccatttggttgccaaagttttcggt |
179 |
Q |
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| T |
44748471 |
aatagaatttttacttgattaatcataataaggacacaatgtttattaaaaaaaaaaaaattaagaaattcattaccatttggttgccaaagtttttggt |
44748372 |
T |
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| Q |
180 |
tagctcaccaaagtaattt |
198 |
Q |
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| T |
44748371 |
tagctcaccaaagtaattt |
44748353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 19079 - 19017
Alignment:
| Q |
69 |
gttgattatgactgtgaatagaatttttacttgattagtcacaataaggagacaatgtttatt |
131 |
Q |
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| T |
19079 |
gttgattataattgtcaatagaatttttactttattagtcacaataaggacgcaatgtttatt |
19017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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