View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_63 (Length: 212)
Name: NF10500_low_63
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 7270247 - 7270427
Alignment:
| Q |
14 |
gcataggtggcatatgaactgggactgtcattgctgtattatcattgctatatgtagtttttatttcatatgcttgggcctatattatatggtcagactg |
113 |
Q |
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| T |
7270247 |
gcattggtggcatatgaactgggaccgtcattgctttattatcattgctatatgtagtttttatttcatatgcttgggcctatattatatggtcagactg |
7270346 |
T |
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| Q |
114 |
tattatatttggatcttcttacaggtaagctgaattttataaaatttgaatcatcaagaaggtcacgttttccataggaca |
194 |
Q |
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| T |
7270347 |
tattatatttggatcttcttacaggtaagctgaattttataaaatttgaatcatcaagaaggtaacgttttccataggaca |
7270427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 7282215 - 7282390
Alignment:
| Q |
19 |
ggtggcatatgaactgggactgtcattgctgtattatcattgctatatgtagtttttatttcatatgcttgggcctatattatatggtcagactgtatta |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7282215 |
ggtggcatatgaactgggaccgtcattgctgtattatcattgctatatgtagtttttatttcatatgcttgggcctatattatatggtcagactgtatta |
7282314 |
T |
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| Q |
119 |
tatttggatcttcttacaggtaagctgaattttataaaatttgaatcatcaagaaggtcacgttttccataggaca |
194 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
7282315 |
tatttggatcttcttacaggtaagctgacttttataaaatttgaatcattaagaaggtaacgttttccataggaca |
7282390 |
T |
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