View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_7 (Length: 422)
Name: NF10500_low_7
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 2 - 404
Target Start/End: Complemental strand, 39001310 - 39000918
Alignment:
| Q |
2 |
taatctaaaaggccataagcatggtttagaaagaataagaaaagggaataaaattgaataaataacatatgtttaatatacgaactttatgactgcattt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
39001310 |
taatctaaaaggccataagcatggtttagaaagaataagaaaagggcataaa----------taacatatgtttaatatatgaactttatgactgcattt |
39001221 |
T |
|
| Q |
102 |
tgataaataaaaacacacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaacagtggaaccagaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39001220 |
tgataaataaaaacacacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaacagtggaaccagaa |
39001121 |
T |
|
| Q |
202 |
ccaatgttaataatagctccttttttgttgttaatcatactaggaagcacagcttttgtgatccaagttgttccttcaacattcactttgataatagtat |
301 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
39001120 |
ccaatgttaataatagctccttttttgttcttaatcatactaggaagcacagctttagtaatccaagttgttccttcaacattcactttgataatagtat |
39001021 |
T |
|
| Q |
302 |
ccatcaaatccaaatcaacctcatgaaaaaatctagcataaggataagccacaccagcaccattaactaaaattccaacatctaaaccatctatagcttc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39001020 |
ccatcaaatccaaatcaacctcatgaaaaaatctagcataaggataagccacaccagcaccattaactaaaattccaacatctaaaccatctatagcttc |
39000921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 95 - 405
Target Start/End: Complemental strand, 38996596 - 38996286
Alignment:
| Q |
95 |
tgcattttgataaataaaaaca-cacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaacagtgg |
193 |
Q |
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|||||||||||||||||||| | || |||||||||| | ||||||||||||| |||||||||| ||||||||||||| | ||||||| |||||| ||| |
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| T |
38996596 |
tgcattttgataaataaaaagaacaaatttatagagata-cttacgcttttgatgctgcataaattgtgacaagaggaaaagaaggaagtacaacactgg |
38996498 |
T |
|
| Q |
194 |
aaccagaaccaatgttaataatagctccttttttgttgttaatcatactaggaagcacagcttttgtgatccaagttgttccttcaacattcactttgat |
293 |
Q |
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|
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38996497 |
aaccagaaccaatgttaataatagctccttttctcttcttaatcatactaggaagcacagcttttgtaatccaagttgttccttcaacattcactttgat |
38996398 |
T |
|
| Q |
294 |
aatagtatccatcaaatccaaatcaacctcatgaaaaaatctagcataaggataagccacaccagcaccattaactaaaattccaacatctaaaccatct |
393 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| | |
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| T |
38996397 |
aatagcatccatcaaatccaaatcaacctcatgaaaaaatctagcataagggtaagccacaccagcactattaactaaaattcccacatctaaaccatat |
38996298 |
T |
|
| Q |
394 |
atagcttcttct |
405 |
Q |
| |
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|| ||||||||| |
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|
| T |
38996297 |
attgcttcttct |
38996286 |
T |
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