View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10500_low_9 (Length: 415)

Name: NF10500_low_9
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10500_low_9
NF10500_low_9
[»] chr6 (16 HSPs)
chr6 (201-401)||(23247216-23247416)
chr6 (201-375)||(23257601-23257778)
chr6 (19-155)||(23247035-23247170)
chr6 (201-371)||(23251628-23251798)
chr6 (25-155)||(23257426-23257555)
chr6 (201-371)||(23266162-23266329)
chr6 (25-155)||(23251452-23251581)
chr6 (202-355)||(23289582-23289729)
chr6 (202-355)||(23283239-23283389)
chr6 (213-313)||(23391074-23391174)
chr6 (101-155)||(23266062-23266116)
chr6 (255-338)||(23593009-23593092)
chr6 (211-313)||(23582849-23582948)
chr6 (211-313)||(23586732-23586831)
chr6 (259-294)||(23633835-23633870)
chr6 (25-71)||(23266015-23266060)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 201 - 401
Target Start/End: Original strand, 23247216 - 23247416
Alignment:
Q  201 tgatacctcatcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaac 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||    
T  23247216 tgatacctcatcatcttgaaaatcttgtacatgaatatcgtcatactcatgatactcaaagctatgtgtaggtgacatcaacgccatattcctccacaac 23247315  T
Q  301 tctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattcaggtcctttgtggcgacgacatcttcgacaatttcaatattgttag 400  Q
    |||||||||||||||||||||| || ||| || ||||||||||||||| ||||||| ||||||||||||||||||||| ||| | | |||||||||||||    
T  23247316 tctggcatattcaacatttcctcctgttcatcaacttccacacaaaacatattcagctcctttgtggcgacgacatctacgatagtgtcaatattgttag 23247415  T
Q  401 t 401  Q
    |    
T  23247416 t 23247416  T

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Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 201 - 375
Target Start/End: Original strand, 23257601 - 23257778
Alignment:
Q  201 tgatacctcatcatcttgaaaatcttgtacatgaatatcttcatact---catgatactcaaagctatgtgtaggggacattagtgccatattcctccac 297  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23257601 tgatacctcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgtgtaggggacattagtgccatattcctcaac 23257700  T
Q  298 aactctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattcaggtcctttgtggcgacgaca 375  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  ||||||||||| ||||||    
T  23257701 aattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccacgaca 23257778  T

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Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 23247035 - 23247170
Alignment:
Q  19 atgctcgattagtgatttaataattcacataaaaagctataaaaagaaattcctttttaattttaacctatgtatatgcagtatttatgctaccaattaa 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23247035 atgctcgattagtgatttaata-ttcacataaaaagctataaaaagaaattcctttttaattttaacctatgtatatgcagtatttatgctaccaattaa 23247133  T
Q  119 aaaggttgtagtatagacatttcctattctacaatcc 155  Q
    ||||||||||||||||||||||||||| |||||||||    
T  23247134 aaaggttgtagtatagacatttcctatcctacaatcc 23247170  T

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Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 201 - 371
Target Start/End: Original strand, 23251628 - 23251798
Alignment:
Q  201 tgatacctcatcatcttgaaaatcttgtacatgaatatcttcatact---catgatactcaaagctatgtgtaggggacattagtgccatattcctccac 297  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23251628 tgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagctatgtgtaggggacattagtgccatattcctccac 23251727  T
Q  298 aactctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattcaggtcctttgtggcgac 371  Q
    ||||||||||||||||||| |||   ||||||||| ||||| |||| |||| ||||||| |||| ||| |||||    
T  23251728 aactctggcatattcaacacttc---ctcttcttcgacttcaacacgaaacatattcagctcctgtgttgcgac 23251798  T

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Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 23257426 - 23257555
Alignment:
Q  25 gattagtgatttaataattcacataaaaagctataaaaagaaattcctttttaattttaacctatgtatatgcagtatttatgctaccaattaaaaaggt 124  Q
    |||||||||||||||||| ||||||||| |||||||| ||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  23257426 gattagtgatttaataatccacataaaa-gctataaagagaaactccttttcaatttcaacctatgtatatgcagaatttatgctaccaattaaaaaggt 23257524  T
Q  125 tgtagtatagacatttcctattctacaatcc 155  Q
    |||||||||||||||||||||||||||||||    
T  23257525 tgtagtatagacatttcctattctacaatcc 23257555  T

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Target: chr6; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 201 - 371
Target Start/End: Original strand, 23266162 - 23266329
Alignment:
Q  201 tgatacctcatcatcttgaaaatcttgtacatgaatatcttcatact---catgatactcaaagctatgtgtaggggacattagtgccatattcctccac 297  Q
    ||||||||||||||||||||| ||||| | ||||| ||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||     
T  23266162 tgatacctcatcatcttgaaagtcttgaaaatgaaaatcttcatattgatcatgatactcaaagctatgtgtaggggacattagtgccatattcctccaa 23266261  T
Q  298 aactctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattcaggtcctttgtggcgac 371  Q
    ||||| ||||||||||||||||||      |||||| |||||||||||||| ||||||  ||||||||||||||    
T  23266262 aactccggcatattcaacatttcc------tcttcttcttccacacaaaacatattcaactcctttgtggcgac 23266329  T

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Target: chr6; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 23251452 - 23251581
Alignment:
Q  25 gattagtgatttaataattcacataaaaagctataaaaagaaattcctttttaattttaacctatgtatatgcagtatttatgctaccaattaaaaaggt 124  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||| || || |||||||||||||||||  |||| |||||||||| ||| |||    
T  23251452 gattagtgatttaataattcacataaaa-gctataaaaataaattccttttcaaattcaacctatgtatatgcagagtttacgctaccaattcaaacggt 23251550  T
Q  125 tgtagtatagacatttcctattctacaatcc 155  Q
    |||||||||||||||||||||||||||||||    
T  23251551 tgtagtatagacatttcctattctacaatcc 23251581  T

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Target: chr6; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 202 - 355
Target Start/End: Original strand, 23289582 - 23289729
Alignment:
Q  202 gatacctcatcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaact 301  Q
    |||||||| |||||||||||   |||||||| || |||||||||||||||   |||||| |||||||||||||||||||||||||||||  |||||||||    
T  23289582 gatacctcttcatcttgaaa---ttgtacatcaaaatcttcatactcatg---ctcaaaactatgtgtaggggacattagtgccatatttttccacaact 23289675  T
Q  302 ctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattca 355  Q
    || |||||||||||| |||||  |||| ||| ||||||||||||||| ||||||    
T  23289676 cttgcatattcaacacttcctcttctttttcgacttccacacaaaacatattca 23289729  T

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Target: chr6; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 202 - 355
Target Start/End: Original strand, 23283239 - 23283389
Alignment:
Q  202 gatacctcatcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaact 301  Q
    |||||||| ||||||||||| ||||||| || || || ||||||||||||   ||| |  |||||||||||||||||||  |||||||||||||||| ||    
T  23283239 gatacctcttcatcttgaaagtcttgtaaatcaaaattttcatactcatg---ctccatactatgtgtaggggacattaacgccatattcctccacatct 23283335  T
Q  302 ctggcatattcaacatttcctgctcttcttctacttccacacaaaacctattca 355  Q
    ||| ||||||||||| |||||  |||| ||| ||||||||||||||| ||||||    
T  23283336 ctgacatattcaacacttcctcttctttttcgacttccacacaaaacatattca 23283389  T

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Target: chr6; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 23391074 - 23391174
Alignment:
Q  213 atcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattc 312  Q
    ||||||||| ||||| |||||||||| |||||| |||| |||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||    
T  23391074 atcttgaaagtcttgaacatgaatattttcatattcattatacccagagctatgtgtaggagacattagtgccatattcctcaacaactctggcatgttc 23391173  T
Q  313 a 313  Q
    |    
T  23391174 a 23391174  T

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Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 23266062 - 23266116
Alignment:
Q  101 atttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatcc 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23266062 atttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatcc 23266116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 338
Target Start/End: Original strand, 23593009 - 23593092
Alignment:
Q  255 ctcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatattcaacatttcctgctcttcttctacttc 338  Q
    ||||| ||||||||||||||||||||| |||||||||||| || ||||||| || ||||||| ||||| ||||| |||| ||||    
T  23593009 ctcaacgctatgtgtaggggacattagagccatattcctcaacgactctggaatgttcaacacttcctcctctttttcttcttc 23593092  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 23582849 - 23582948
Alignment:
Q  211 tcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatat 310  Q
    ||||||||||| ||||   ||| ||||| || |||||||| |||| | |||||||||||||| |||||||| |||||||| ||||||| |||| |||| |    
T  23582849 tcatcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactccacatctcttgcatgt 23582945  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 23586732 - 23586831
Alignment:
Q  211 tcatcttgaaaatcttgtacatgaatatcttcatactcatgatactcaaagctatgtgtaggggacattagtgccatattcctccacaactctggcatat 310  Q
    ||||||||||| ||||   ||| ||||| || |||||||| |||| | |||||||||||||| |||||||| |||||||| ||||||| |||| |||| |    
T  23586732 tcatcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactccacatctcttgcatgt 23586828  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 23633835 - 23633870
Alignment:
Q  259 aagctatgtgtaggggacattagtgccatattcctc 294  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23633835 aagctatgtgtaggggacattagagccatattcctc 23633870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 23266015 - 23266060
Alignment:
Q  25 gattagtgatttaataattcacataaaaagctataaaaagaaattcc 71  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  23266015 gattagtgatttaaaaattcacat-aaaagctatgaaaagaaattcc 23266060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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