View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10501_high_1 (Length: 452)
Name: NF10501_high_1
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 36867452 - 36867872
Alignment:
| Q |
18 |
attaatccattaatctaaaagatcaagggaaagttcaaacgcaacctcaaataaattctttgcatatgctcgtgttcaaaggagacaattatgattagtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36867452 |
attaatccattaatctaaaagatcaagggaaagttcaaacgcaacctcaaataaattctttgcatatgctcgtgttcaaaggagacaattatgattagtg |
36867551 |
T |
|
| Q |
118 |
gcatgcctaaatgaaagtgaatgatggttgcaaactacggtgcaaaaacctgtgcatcgtgagttcaagaaaagatgcatatggattgttattgatccat |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36867552 |
gtgtgcctaaatgaaagtgaatgatggttgcaaactacggcgcaaaaacctgtgcatcgtgagttcaagaaaagatgcatatggattgttattgatccat |
36867651 |
T |
|
| Q |
218 |
tagtgtgagggttcaaacatcttcaagaagataattgatgaagaaacgccaaagggagtgtggcaaagactcaagaaggtgtatggtggcgatgtcaagc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36867652 |
tagtgtgagggttcaaacatcttcaagaagataattgatgaagaaacgccaaagggagtgtggcaaagactcaagaaggtgtatggtggcgatgtcaagc |
36867751 |
T |
|
| Q |
318 |
tcaagaaagtgaagctccaagccttgtgccatcaccatgagatgctctaaatgaccaagcaaagtcaattgcagagttctaatccaatgaagtttatttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36867752 |
tcaagaaagtgaagctccaagccttgtgccatcaccatgagatgctctgaatgactaagcaaagtcaattgcagagttctgatccaatgaagtttatttg |
36867851 |
T |
|
| Q |
418 |
tctttgaaatttccaaaatct |
438 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36867852 |
tctttgaaatttccaaaatct |
36867872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University