View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_high_13 (Length: 250)
Name: NF10501_high_13
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 38410951 - 38411174
Alignment:
| Q |
1 |
accaaatttatggttcagtttggtttctaaaaaccgttttcataaaaaccaannnnnnnctaaaactgattcaggttagccaacaaggatgtatgatatc |
100 |
Q |
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| T |
38410951 |
accaaatttatgg--cagtttggtttctaaataccgttttcataaaaaccaacttttttctaaaactgattcaggttagccaacaaggatgtatgatatc |
38411048 |
T |
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| Q |
101 |
atagtcgcagaaatgaaatgtcattttattagtaaccaaatgttattttctattctccctccaaaccaaaacttgtcatctctcttcacctttcatcaga |
200 |
Q |
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| T |
38411049 |
atagtcgcagaaatgaaatgtcattttattagtaaccaaatgttattttctattctccctccaaaccaaaa------------cttcacctttcatcaga |
38411136 |
T |
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| Q |
201 |
aatgcaaacgatcgccgttcttttgcatcgtttacctt |
238 |
Q |
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| T |
38411137 |
aatgcaaacgatcgccgttcttttgcatcgtttacctt |
38411174 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 1884709 - 1884768
Alignment:
| Q |
120 |
gtcattttattagtaaccaaatgttattttctattctccctccaaaccaaaacttgtcat |
179 |
Q |
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| T |
1884709 |
gtcattttattagtaaccaagtgttgtttcccattctccatccaaacaaaaacttttcat |
1884768 |
T |
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