View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_high_15 (Length: 245)
Name: NF10501_high_15
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_high_15 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 38410697 - 38410813
Alignment:
| Q |
8 |
agatggacatcaactcacgcctaagggaaattattgtgctttgtgtaaaaaagtccatgactaaccgttagagacatacatgaacctgtttgtgtatata |
107 |
Q |
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| T |
38410697 |
agatgcacatcaactcacgcctaagggaaattattgtgctttgtgtaaaaaagtccatgactaaccgttagagacatacatgaacctgtttgtgtatata |
38410796 |
T |
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| Q |
108 |
tactattttatgtttca |
124 |
Q |
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| T |
38410797 |
tgctattttatgtttca |
38410813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 38410811 - 38410864
Alignment:
| Q |
192 |
tcaatctactaccaaagaagtaaatggtggccgtaagaccggcctttttatcat |
245 |
Q |
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| T |
38410811 |
tcaatctactaccaaagaagtaaatggtagccgtaagaccggcctttttatcat |
38410864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 1091001 - 1090886
Alignment:
| Q |
8 |
agatggacatcaactcacgcctaagggaaattattgtgctttgtgtaaaaaagtccatgactaaccgttagagacatacatgaacctgtttgtgtatata |
107 |
Q |
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| T |
1091001 |
agatgcacatcaactcacagctaaaggaaattattgtgccttgtgtaaaaaagtccatgattaacagttagagacatacatgaaccagtttgcgtatata |
1090902 |
T |
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| Q |
108 |
tactattttatgtttc |
123 |
Q |
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| T |
1090901 |
tgctattttatctttc |
1090886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 45062856 - 45062911
Alignment:
| Q |
190 |
aatcaatctactaccaaagaagtaaatggtggccgtaagaccggcctttttatcat |
245 |
Q |
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| T |
45062856 |
aatcaatctactaccaaagaagtaaatggtagccgtaagaccggcatgtttatcat |
45062911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 45058895 - 45058944
Alignment:
| Q |
190 |
aatcaatctactaccaaagaagtaaatggtggccgtaagaccggcctttt |
239 |
Q |
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| T |
45058895 |
aatcaatctactaccatagaagtaaatggaagccgtaagaccggcctttt |
45058944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 45059664 - 45059706
Alignment:
| Q |
190 |
aatcaatctactaccaaagaagtaaatggtggccgtaagaccg |
232 |
Q |
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| T |
45059664 |
aatcaatctactaccaaagaagtaaatggtagcggtaagaccg |
45059706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 45062056 - 45062104
Alignment:
| Q |
190 |
aatcaatctactaccaaagaagtaaatggtggccgtaagaccggcctttt |
239 |
Q |
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| T |
45062056 |
aatcaatctactaccaat-aagtaaatggcagccgtaagaccggcctttt |
45062104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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