View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_1 (Length: 529)
Name: NF10501_low_1
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Original strand, 52578598 - 52579072
Alignment:
| Q |
19 |
catcagaaaatgacacaatattggttacgcgtggatcatttgtttgaagataaacctcttgaaatacactnnnnnnntcaaccccaacaaacgttctctg |
118 |
Q |
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| T |
52578598 |
catcagaaaatgacacaatattggttacgcgtggatcatttgtttgaagataaacctcttgaaatacactaaaaaaatcaaccccaacaaacgttctctg |
52578697 |
T |
|
| Q |
119 |
aaagagcaatatagaataccatattgagagtcatatgatatgatgattaagcatgtgttgaactattgaacaggtgagtgatccttgttgtgttagatag |
218 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578698 |
aaagagcaatatagaataccatattgag---------------tcattaagcatgtgttgaactattgaacaggtgagtgatccttgttgtgttagatag |
52578782 |
T |
|
| Q |
219 |
gtattatcaagttggaagtatatttctaaatttatagatgagaaaaatagtatatgcagctttccattagagatttacttttcagtgacataataataac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578783 |
gtattatcaagttggaagtatatttctaaatttatagatgagaaacatagtatatgcagctttccattagagatttacttttcagtgacataataataac |
52578882 |
T |
|
| Q |
319 |
aacctgaatgggtgatgctgttccaggtcttgtagtgaaaatgagctgccatcgaccctcaatcaaacttgaatttgtctgcagaacagtagagaataga |
418 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52578883 |
aacctgaatgggtgatgctgttccaggtcttgtggtgaaaatgagctgccatcgaccctcaatcaaacttgaatttgtctgcagaacagaagagaataga |
52578982 |
T |
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| Q |
419 |
gattgaccatgtcatgaaaaaggataataaaaagttaaacatagagagcgaaattgaagacgaagacgaaccggatcagacacaccccct |
508 |
Q |
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| T |
52578983 |
gattgaccatgtcatgaaaaaggataataaaaagttaaacatagagagcgaaattgaagacgaagacgaaccggatcagacacaccccct |
52579072 |
T |
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