View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_10 (Length: 377)
Name: NF10501_low_10
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 32834916 - 32834558
Alignment:
| Q |
18 |
aataaattctagtgatattccaaaaactcaatacatataaatcttgaaagttgaaaccccggtcatagtaaaaatccaaggcatgtataaaaatgaatta |
117 |
Q |
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| T |
32834916 |
aataaattctagtgatattccaaaaactcaatacatataaatcttgaaaattgaaaccccggtcatagtaaaaatccaaggcatgtataaaaatgaatta |
32834817 |
T |
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| Q |
118 |
aggaacatatatagattccatgcatatgataagatactaactacacagacaaatacattcgataccaacaccattatctttctttaggaatatttattta |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32834816 |
aggaacatacatagattccatgcatatgataagatactaactacacagacaaatacattcgataccaacaccattatctttctttaggaaaatttattta |
32834717 |
T |
|
| Q |
218 |
tattcacaagtacaaagataaataaatcaaagaaagaaagaa----agaagcataccagtgtaaagatttgggaaatgactagggcgacagtgatgcccc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32834716 |
tattcacaagtacaaagataaataaatcaaagaaagaaagaaagaaagaagcataccagtgtaaagatttgggaaatgactagggcgacagtgatgcccc |
32834617 |
T |
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| Q |
314 |
agaggaacgtcttctctctatcttgatgcggtggatcctggttcggtttctctgcttct |
372 |
Q |
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| T |
32834616 |
agaggaacgtcttctctctatcttgatgcggtggatcctggttcggtttctgtgcttct |
32834558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 32841295 - 32840944
Alignment:
| Q |
18 |
aataaattctagtgatattccaaaaactcaatacatataaatcttgaaagttgaaaccccggtcatagtaaaaatccaaggcatgtataaaaatgaatta |
117 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32841295 |
aataaattcttgtgatattccaaaaactcaatacatataaatcttgaaagttgaaaccctggtcatagtaaaaatccaaggcatgtataaaaatgaattg |
32841196 |
T |
|
| Q |
118 |
aggaacatatatagattccatgcatatgataagatactaactacacagacaaatacattcgataccaacaccattatctttctttaggaatatttattta |
217 |
Q |
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|||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||| | |||||||| |
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| T |
32841195 |
aggagcatatatagattgcatgcatacaataagatactaactacgcagacaaatacattcaataccaacacaattatctttcttgaggagtctttattta |
32841096 |
T |
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| Q |
218 |
tattcacaagtacaaagataaataaatcaaa-----gaaagaaagaaagaagcataccagtgtaaagatttgggaaatgactagggcgacagtgatgccc |
312 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||| |
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| T |
32841095 |
tattcacacgtacaaagataaataaatcaaaagaatgaaagaaagaaagacacataccagtgtaaggatttgggaaatgactaaggcgactgtgatgccc |
32840996 |
T |
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| Q |
313 |
cagaggaacgtcttctctctatcttgatgcggtggatcctggttcggtttct |
364 |
Q |
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| T |
32840995 |
ctgaggaacgtcttctctctatcttgctgcggtggagcctggttcggtttct |
32840944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 31661713 - 31661789
Alignment:
| Q |
79 |
gtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatatatagattccatgcatatgataagatact |
155 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
31661713 |
gtcatagtgaaaatccaaggcatgtataaaaatgaattgaggaacatatatagattgcatgcacatgataagatact |
31661789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 31683179 - 31683255
Alignment:
| Q |
79 |
gtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatatatagattccatgcatatgataagatact |
155 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||| |
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| T |
31683179 |
gtcatagtgaaaatccaaggcatgtataaaaatgaattgaggaacatgtatagattgcatgcacatgataagatact |
31683255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 7479437 - 7479345
Alignment:
| Q |
18 |
aataaattctagtgatattccaaaaactcaatacatataaatcttgaaagttgaaaccccggtcatagtaaaaatccaaggcatgtataaaaat |
111 |
Q |
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|||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||| ||||||||| |
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| T |
7479437 |
aataaattcttgtgaaattccaaaaactcaatacatatatatcttgaaagttgaaa-ctctgtcatagtaaaaatccaaggcaaatataaaaat |
7479345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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