View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_11 (Length: 377)
Name: NF10501_low_11
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 44569487 - 44569142
Alignment:
| Q |
14 |
agggaggatgagagagaactgagattgannnnnnnnnnnagctgacactttgtatgagtatttaatattatttttgaagtgtgtataaggtgatatgcca |
113 |
Q |
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| T |
44569487 |
agggaggatgagagagaactgagattgaaacttttt---agcagacactttgtatgagtatttaatattatttttgaagtgtgtataaggtaatatgcca |
44569391 |
T |
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| Q |
114 |
tctatgtgtgtatacctatcatcactccagaaacaatgtctaaatattcaaacaatttcattcaaacacttgaatttgtaagtggttgcattgtatagtg |
213 |
Q |
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| T |
44569390 |
cctatgtatgtatacctatcatcactccacaaacaatgtctaaatattcgaacaatttcattcaaacacttgaatttgtaagtggttgcattgtacagtg |
44569291 |
T |
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| Q |
214 |
aagaaagatataaatcattttagaagatatataagaagatacagttgttcaaaccacatcatcctaaacataaaaactaacaccccaattnnnnnnnntc |
313 |
Q |
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| T |
44569290 |
aagaaagttataaatcattttagaagatatataagaaaatacaattgttcaaacaacatcatcctaaacataaaaactaacaccccgattaaaaaaaatc |
44569191 |
T |
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| Q |
314 |
attttaggacatgtgattcccgcataaaatataagtaaagtgatattta |
362 |
Q |
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| T |
44569190 |
attttaggacatatgactccggcataaaatataagtaaagtgatattta |
44569142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 51941548 - 51941632
Alignment:
| Q |
53 |
agctgacactttgtatgagtatttaatattatttttgaagtgtgtataaggtgatatgccatctatgtgtgtatacctatcatcactc |
140 |
Q |
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| T |
51941548 |
agctggcactttgtatgaatatttaatattattttt---gtgtgtataagatggtatgccacctgtgtgtgtttacctatcatcactc |
51941632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 15027872 - 15027827
Alignment:
| Q |
92 |
gtgtgtataaggtgatatgccatctatgtgtgtatacctatcatca |
137 |
Q |
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| T |
15027872 |
gtgtgtataaggtgatatgccacctatgtgtgtttatctatcatca |
15027827 |
T |
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