View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10501_low_12 (Length: 366)

Name: NF10501_low_12
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10501_low_12
NF10501_low_12
[»] chr8 (16 HSPs)
chr8 (153-350)||(3326069-3326266)
chr8 (154-350)||(3408407-3408603)
chr8 (159-350)||(7165759-7165950)
chr8 (154-348)||(3287542-3287736)
chr8 (17-127)||(31175246-31175356)
chr8 (247-350)||(3392766-3392869)
chr8 (156-350)||(13786432-13786626)
chr8 (199-350)||(3268358-3268509)
chr8 (247-350)||(3363014-3363117)
chr8 (249-347)||(13807694-13807792)
chr8 (154-350)||(3263615-3263811)
chr8 (153-350)||(31174645-31174842)
chr8 (17-127)||(3399198-3399308)
chr8 (190-350)||(3313644-3313804)
chr8 (251-350)||(3399804-3399903)
chr8 (246-280)||(16441613-16441647)
[»] chr3 (3 HSPs)
chr3 (247-347)||(6907030-6907130)
chr3 (250-323)||(32412146-32412219)
chr3 (167-215)||(32412063-32412111)
[»] chr2 (1 HSPs)
chr2 (154-350)||(14768004-14768200)
[»] chr5 (8 HSPs)
chr5 (35-127)||(20811697-20811789)
chr5 (35-127)||(20838052-20838144)
chr5 (247-350)||(30416727-30416830)
chr5 (247-329)||(15801799-15801881)
chr5 (247-329)||(12596554-12596636)
chr5 (153-350)||(20837256-20837453)
chr5 (153-348)||(20810903-20811098)
chr5 (154-220)||(30416881-30416947)
[»] chr7 (2 HSPs)
chr7 (17-127)||(8372346-8372456)
chr7 (152-316)||(8372815-8372979)
[»] scaffold0468 (1 HSPs)
scaffold0468 (247-350)||(7436-7539)
[»] chr4 (3 HSPs)
chr4 (253-351)||(4359020-4359118)
chr4 (253-351)||(4125734-4125832)
chr4 (253-351)||(4322396-4322494)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 153 - 350
Target Start/End: Original strand, 3326069 - 3326266
Alignment:
Q  153 aaaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaaca 252  Q
    |||||||||||||||||  |||||||| |  |||| ||||||||||||||||||||||| ||| |||||   |||| ||||||   ||||||  |||| |    
T  3326069 aaaagttcttacagtatgttttgtcaaaatgtcatgcacatcctcatgaaaccacaatctactacgcttcccaggctcttttgcagaactttcacgaata 3326168  T
Q  253 atttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    ||||||||||||||||||| ||||||   |||||| | |||||| ||||||||||||| |||||||||||||| ||| ||||| ||| ||||||||||    
T  3326169 atttctcttcccatgtctcttatcaaacaatgcattccaagcttgttattcttttcaatttttacaaggctccgctctatgagaacacttattccaat 3326266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 3408407 - 3408603
Alignment:
Q  154 aaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaacaa 253  Q
    ||||||||||||||||| |||| ||| |||||||  |||||||| ||||||||||||||||| |||||   |||  || |||   ||||||  || ||||    
T  3408407 aaagttcttacagtattttttgccaaaacatcatgtacatcctcgtgaaaccacaatcgactacgcttcccaggttctcttgctgaactttcacggacaa 3408506  T
Q  254 tttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    |||||||||||||||||| ||| || |||||||| | |||||| |||||||| ||||||||||  |||||||  || |||||||| | |||||||||    
T  3408507 tttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttctcaacttttaggaggctccggtctatgaggaccgctattccaat 3408603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 159 - 350
Target Start/End: Original strand, 7165759 - 7165950
Alignment:
Q  159 tcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaacaatttct 258  Q
    |||||| ||||| |||||||| |||||||  |||||||| |||||||| ||||||||||||||    ||   |||||   ||||||  ||||||||||||    
T  7165759 tcttaccgtattttttgtcaaaacatcatgtacatcctcgtgaaaccataatcgactgcgcttccctggattttttgctgaactttggcgaacaatttct 7165858  T
Q  259 cttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    |||||||||||||  | ||| |||||||| | |||||| ||||||||||||| ||| |||||||||| ||| | |||||| |||||||||||    
T  7165859 cttcccatgtctctaagcaaatcatgcattccaagcttgttattcttttcaattttcacaaggctccgctctacgaggaccgttattccaat 7165950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 348
Target Start/End: Original strand, 3287542 - 3287736
Alignment:
Q  154 aaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaacaa 253  Q
    ||||||||||||| |||  | ||||| | |||||  ||||||||||||||||||||||||||||||||    ||  ||||||   ||||||  |||||||    
T  3287542 aaagttcttacagaatttgtggtcaaaatatcatgtacatcctcatgaaaccacaatcgactgcgcttccctggttcttttgctgaactttcacgaacaa 3287641  T
Q  254 tttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattcca 348  Q
    ||||||||||||| |||| ||| || ||||||||   |||||| ||||  || ||||||||||  ||||||| ||| | |||||| |||||||||    
T  3287642 tttctcttcccatatctcttattaaatcatgcatttcaagcttgttataattgtcaacttttaggaggctccgctctacgaggactgttattcca 3287736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 31175246 - 31175356
Alignment:
Q  17 agaacaggcaaaattagcttcggtactaatgctttccaggagatgnnnnnnntgaggcttttaaaacttgatggtgttcatctcatcggagattatggtt 116  Q
    ||||||||||  ||||  || ||||||||| ||||||||||||||       |||||||||||||||||||||||||||| || || ||||||||||| |    
T  31175246 agaacaggcaggattatatttggtactaattctttccaggagatgcaaaagctgaggcttttaaaacttgatggtgttcaccttatgggagattatgggt 31175345  T
Q  117 taatttccaaa 127  Q
    |||||||||||    
T  31175346 taatttccaaa 31175356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 350
Target Start/End: Original strand, 3392766 - 3392869
Alignment:
Q  247 cgaacaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattc 346  Q
    ||||||||||| |||||||||||||||| ||| |||||||| | |||||| |||||||||||||||||||  ||||| ||||| || |  || |||||||    
T  3392766 cgaacaatttcccttcccatgtctcgtagcaaatcatgcattccaagctttttattcttttcaacttttatgaggcttctctctatcaacactgttattc 3392865  T
Q  347 caat 350  Q
    ||||    
T  3392866 caat 3392869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 156 - 350
Target Start/End: Complemental strand, 13786626 - 13786432
Alignment:
Q  156 agttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaacaatt 255  Q
    ||||||||||||||| | |||||| ||||| |  | ||| |||||||||||||||||||| ||||     ||| ||||||   ||||||  |||||||||    
T  13786626 agttcttacagtattttctgtcaaaacatcgtgtatatcgtcatgaaaccacaatcgactacgctcccctggctcttttgctgaactttcacgaacaatt 13786527  T
Q  256 tctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    |||||||||||||||| ||| || | |||||| | |||  | ||||| |  ||||||||||  ||||||| ||| |||||||||| |||||||||    
T  13786526 tctcttcccatgtctcttattaacttatgcattccaagggtgttattgtcctcaacttttaagaggctccgctctatgaggacagctattccaat 13786432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 3268358 - 3268509
Alignment:
Q  199 tgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaacaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttat 298  Q
    ||||||||||||||||| |||||   |||| |||||    | ||||| |||||||| |||||||||||||||| || |||   |||||| | ||| || |    
T  3268358 tgaaaccacaatcgactacgcttcccaggctcttttattgatcttttacgaacaatctctcttcccatgtctcttagcaaactatgcattccaagtttgt 3268457  T
Q  299 tattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    || ||||||||| |||||  ||||| ||||| ||||||||||||||||||||    
T  3268458 tactcttttcaatttttaggaggcttctctctatgaggacagttattccaat 3268509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 350
Target Start/End: Complemental strand, 3363117 - 3363014
Alignment:
Q  247 cgaacaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattc 346  Q
    ||||||||||| |||||||||||||||| |||  ||||||| | |||||| |||||||||||||||||||  ||||| ||||| || |  || |||||||    
T  3363117 cgaacaatttcccttcccatgtctcgtagcaaagcatgcattccaagctttttattcttttcaacttttatgaggcttctctctatcaacactgttattc 3363018  T
Q  347 caat 350  Q
    ||||    
T  3363017 caat 3363014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 347
Target Start/End: Complemental strand, 13807792 - 13807694
Alignment:
Q  249 aacaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattcc 347  Q
    |||||| |||||||||||||||||||  ||  ||||||| | ||| |||| ||||||||| ||||||| |||||||| ||| ||||||| |||||||||    
T  13807792 aacaatctctcttcccatgtctcgtagtaaaccatgcattccaagtttatcattcttttcgacttttagaaggctccgctctatgaggatagttattcc 13807694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 3263615 - 3263811
Alignment:
Q  154 aaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaacaa 253  Q
    ||||||||||||| ||| || ||||| | |||||   ||||||  |||||||| | ||||||  |||||  |||| ||||||   ||||||  | |||||    
T  3263615 aaagttcttacagaatttttggtcaaaatatcatgtgcatcctggtgaaaccatagtcgactaagctttccaggctcttttgttgaactttcacaaacaa 3263714  T
Q  254 tttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    |||||||||||||||||| ||| || |||||||| | ||  || ||||||||||| | ||||||||||||||  || |||||||  | |||||||||    
T  3263715 tttctcttcccatgtctcttattaaatcatgcattccaattttgttattcttttccatttttacaaggctccgttctatgaggatcgctattccaat 3263811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 350
Target Start/End: Complemental strand, 31174842 - 31174645
Alignment:
Q  153 aaaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgaca-aactttttcgaac 251  Q
    |||||||||||| || || |||| ||| |||||   |||||| ||||||||||||||||| ||  |||||| |||| |||| |||  || |||  | |||    
T  31174842 aaaagttcttacggttttttttgacaaaacatccagcacatcatcatgaaaccacaatcggctatgctttgcaggctcttt-gactgaaatttcgccaac 31174744  T
Q  252 aatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    |||| |||||||||||||||  | ||| ||||||||   |||||| ||||| || ||||||||||  ||||| | |||||||||||||  |||||||||    
T  31174743 aattgctcttcccatgtctctgagcaaatcatgcatttgaagcttgttatttttatcaacttttatgaggctgcgctcaatgaggacaactattccaat 31174645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 3399308 - 3399198
Alignment:
Q  17 agaacaggcaaaattagcttcggtactaatgctttccaggagatgnnnnnnntgaggcttttaaaacttgatggtgttcatctcatcggagattatggtt 116  Q
    |||||||||| |||||  || |||||| || |||| |||||||||       |||| ||||||||||||||||||||||| || || ||||| ||||| |    
T  3399308 agaacaggcagaattatatttggtactgattctttgcaggagatgcaaaagctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggt 3399209  T
Q  117 taatttccaaa 127  Q
    |||||||||||    
T  3399208 taatttccaaa 3399198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 350
Target Start/End: Complemental strand, 3313804 - 3313644
Alignment:
Q  190 acatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaacaatttctcttcccatgtctcgtatcaagtcatgcatgc 289  Q
    |||||||||||| ||||||||||||| ||||||  |||| | |  |   ||||||  || |||||||||| |||||||||||| |  || |||||||| |    
T  3313804 acatcctcatgataccacaatcgactacgcttttcaggctcctcaggtgaactttcacggacaatttctcgtcccatgtctcgcagtaaatcatgcattc 3313705  T
Q  290 aaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
     |||||| |||| |||||||| |||||  ||||| | |||||| || || |||||||||||    
T  3313704 caagcttgttatacttttcaatttttattaggcttcgctcaatcagcactgttattccaat 3313644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 3399804 - 3399903
Alignment:
Q  251 caatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    ||||| |||||||||||||||  | ||| |||||||| | |||||| ||||||||||| |||||||  ||||| | ||| ||||| | || |||||||||    
T  3399804 caattgctcttcccatgtctctgagcaaatcatgcattccaagcttgttattcttttcgacttttaggaggctgcgctctatgagaatagatattccaat 3399903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 16441647 - 16441613
Alignment:
Q  246 tcgaacaatttctcttcccatgtctcgtatcaagt 280  Q
    ||||||||||||||| |||||||||||||||||||    
T  16441647 tcgaacaatttctctgcccatgtctcgtatcaagt 16441613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 6907030 - 6907130
Alignment:
Q  247 cgaacaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattc 346  Q
    ||||||||||||||||||||||||| ||| || |||||||| | |||||| ||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  6907030 cgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaaaaggctcctctctatgaggacagctattc 6907129  T
Q  347 c 347  Q
    |    
T  6907130 c 6907130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 32412146 - 32412219
Alignment:
Q  250 acaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggct 323  Q
    |||||||||||||||||||||| || ||  |||||||| | ||| || ||||||||||||| ||||||||||||    
T  32412146 acaatttctcttcccatgtctcttagcagatcatgcattccaagtttgttattcttttcaatttttacaaggct 32412219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 32412063 - 32412111
Alignment:
Q  167 tattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgact 215  Q
    |||| |||||||| ||||||| ||| |||||||||||||| ||||||||    
T  32412063 tattttttgtcaaaacatcatgcacgtcctcatgaaaccataatcgact 32412111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 14768004 - 14768200
Alignment:
Q  154 aaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaacaa 253  Q
    ||||||||||||||||| |||| ||| |||| | | |||||||| || ||| |||||||||| ||||||  |||| ||||||   ||||||  || ||||    
T  14768004 aaagttcttacagtattttttgccaaaacatgagatacatcctcgtggaacaacaatcgactacgctttccaggctcttttggtgaactttgacggacaa 14768103  T
Q  254 tttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    |||||||||||||||| | |||||| ||||||||   |||||| ||||||||| |||||||||  |||||||  || |||||||||| |||||||||    
T  14768104 tttctcttcccatgtcccatatcaaatcatgcatttgaagcttgttattctttacaacttttaagaggctccgttctatgaggacagatattccaat 14768200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 20811697 - 20811789
Alignment:
Q  35 ttcggtactaatgctttccaggagatgnnnnnnntgaggcttttaaaacttgatggtgttcatctcatcggagattatggtttaatttccaaa 127  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  20811697 ttcggtactaatgctttccaggagatgaaaaaactgaggcttttaaaacttgatggtgttgacctcatcggagattatggtttaatttccaaa 20811789  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 20838052 - 20838144
Alignment:
Q  35 ttcggtactaatgctttccaggagatgnnnnnnntgaggcttttaaaacttgatggtgttcatctcatcggagattatggtttaatttccaaa 127  Q
    ||||||||||||||||||||||| |||       |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  20838052 ttcggtactaatgctttccaggacatgaaaaaactgaggcttttaaaacttgatggtgttgacctcatcggagattatggtttaatttccaaa 20838144  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 350
Target Start/End: Complemental strand, 30416830 - 30416727
Alignment:
Q  247 cgaacaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattc 346  Q
    ||||||||||||||||||||||||| ||| || |||||||| | |||||| |||||||||||||||||||  ||||||| ||| |||||||||| |||||    
T  30416830 cgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctatgaggacagatattc 30416731  T
Q  347 caat 350  Q
    ||||    
T  30416730 caat 30416727  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 15801881 - 15801799
Alignment:
Q  247 cgaacaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctc 329  Q
    |||||||||||||||||||||||||||| ||   ||||||| | |||||| |||||||||||||||||||  ||||| |||||    
T  15801881 cgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctc 15801799  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 12596636 - 12596554
Alignment:
Q  247 cgaacaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctc 329  Q
    |||||||||||||||||||||||| ||| |||  ||| ||| | |||||| |||||||||||||||||||  ||||| |||||    
T  12596636 cgaacaatttctcttcccatgtcttgtagcaaagcattcattccaagcttgttattcttttcaacttttatgaggcttctctc 12596554  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 350
Target Start/End: Complemental strand, 20837453 - 20837256
Alignment:
Q  153 aaaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaaca 252  Q
    ||||||||||||| | || |||  ||||||||| | |||||| ||||||||||||||||||||  |||||| |||| ||||     ||||||  | | ||    
T  20837453 aaaagttcttacatttttttttaacaagacatcgttcacatcgtcatgaaaccacaatcgactatgctttgcaggctctttgattgaactttcaccagca 20837354  T
Q  253 atttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaat 350  Q
    |||  ||||||||||||||  | ||| || ||||| | |||| | ||||||||||| |||||||| ||||| | ||| ||||| | || |||||||||    
T  20837353 attgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgagaatagatattccaat 20837256  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 348
Target Start/End: Complemental strand, 20811098 - 20810903
Alignment:
Q  153 aaaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaaca 252  Q
    ||||||||||||| | || |||  ||||||||| | |||||| ||||||||||||||||||||  |||||| |||| ||||     ||||||  | | ||    
T  20811098 aaaagttcttacatttttttttaacaagacatcgttcacatcgtcatgaaaccacaatcgactatgctttgcaggctctttgattgaactttcaccagca 20810999  T
Q  253 atttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattcca 348  Q
    |||  ||||||||||||||  | ||| || ||||| | |||| | ||||||||||| |||||||| ||||| | ||| ||||| | || |||||||    
T  20810998 attgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgagaatagatattcca 20810903  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 30416947 - 30416881
Alignment:
Q  154 aaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgct 220  Q
    ||||||||||||||||| |||||||| |||||||  ||||| |  ||||||||||| ||||| ||||    
T  30416947 aaagttcttacagtattatttgtcaaaacatcatgtacatctttctgaaaccacaaccgactacgct 30416881  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 8372456 - 8372346
Alignment:
Q  17 agaacaggcaaaattagcttcggtactaatgctttccaggagatgnnnnnnntgaggcttttaaaacttgatggtgttcatctcatcggagattatggtt 116  Q
    |||||||||| |||| |||| || |||||||||||||||||||||       |||||||||||||||||||||||||| | ||||||||||||||||| |    
T  8372456 agaacaggcagaatttgctttggcactaatgctttccaggagatggaaaaactgaggcttttaaaacttgatggtgttgacctcatcggagattatgggt 8372357  T
Q  117 taatttccaaa 127  Q
    |||||||||||    
T  8372356 taatttccaaa 8372346  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 316
Target Start/End: Original strand, 8372815 - 8372979
Alignment:
Q  152 aaaaagttcttacagtattgtttgtcaagacatcatacacatcctcatgaaaccacaatcgactgcgctttgaaggcacttttgacaaactttttcgaac 251  Q
    ||||| |||||||||| || |||| |||||||||  |||| ||||||||| |||||||||||||  |||||  |||| ||||||   ||||||  |  ||    
T  8372815 aaaaaattcttacagttttttttgacaagacatccaacacgtcctcatgacaccacaatcgactatgcttttcaggctcttttgctgaactttcgctgac 8372914  T
Q  252 aatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaactttta 316  Q
     ||| ||||||||||||| ||||  || ||||||||   || ||| |||||||| ||||||||||    
T  8372915 gattgctcttcccatgtcgcgtagtaaatcatgcatctgaaacttgttattcttatcaactttta 8372979  T

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Target: scaffold0468 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 350
Target Start/End: Original strand, 7436 - 7539
Alignment:
Q  247 cgaacaatttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattc 346  Q
    ||||| ||||||||||||||||||| ||| || |||||||| | |||||| ||||||||||| ||||||| |||||||||||| |||||||||| |||||    
T  7436 cgaactatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcgacttttagaaggctcctctctatgaggacagctattc 7535  T
Q  347 caat 350  Q
    ||||    
T  7536 caat 7539  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 4359118 - 4359020
Alignment:
Q  253 atttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaatt 351  Q
    |||||||||||||| ||||| | ||| |||||||||| |||||| || || |  |||||  |||||||||| |||||||  |||||| |||||||||||    
T  4359118 atttctcttcccatatctcggagcaaatcatgcatgccaagcttgttcttatcatcaaccgttacaaggcttctctcaacaaggacacttattccaatt 4359020  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 4125734 - 4125832
Alignment:
Q  253 atttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaatt 351  Q
    |||||||||||||| ||||| | ||| |||||||||| |||||| || || |  |||||| |||||||||| |  ||||  |||||| |||||||||||    
T  4125734 atttctcttcccatatctcgcagcaaatcatgcatgccaagcttgttcttatcatcaactgttacaaggcttcgttcaacaaggacacttattccaatt 4125832  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 4322396 - 4322494
Alignment:
Q  253 atttctcttcccatgtctcgtatcaagtcatgcatgcaaagcttattattcttttcaacttttacaaggctcctctcaatgaggacagttattccaatt 351  Q
    ||||| |||||||| ||||| | ||| |||||||||| |||||| || || |  |||||  |||||||||| |||||||  |||||| |||||||||||    
T  4322396 atttcccttcccatatctcgcagcaaatcatgcatgccaagcttgttcttatcatcaaccgttacaaggcttctctcaacaaggacacttattccaatt 4322494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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