View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_13 (Length: 363)
Name: NF10501_low_13
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 41894870 - 41894536
Alignment:
| Q |
11 |
agagaagaagagggaaagaagatttgccaaacatgaactctaatttataaaacccccgtctttattctccttcttctatgcaaaggcagtttattaagca |
110 |
Q |
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| T |
41894870 |
agagaagaagagggaaagaagatttggcaaacatgaactctaatttataaaacccccgtctttattctccttcttctatgcaaaggcagtttattaagca |
41894771 |
T |
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| Q |
111 |
tgtaggtttgttaaagtcataacctttttagtccacaaatttcgttcgactattttgaaatattccaacgaaacacgatatggtgatgtcctcactcatt |
210 |
Q |
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| T |
41894770 |
tgtaggtttgttaaagtcattacctttttagtcaacaaatttggttcgactattttgaaatattccaacgaaacacgatatggtgatgtcctcactcatt |
41894671 |
T |
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| Q |
211 |
ttcatttattcgtgctgtttgagtgtactaaagattggacaatgttacaaagtattcatttttctcaaatagtctgttattaacattataatcatcactt |
310 |
Q |
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| T |
41894670 |
ttcatttattcgtgctgtgtgagtgtactaaagattggacaatgttacaaagtattcatttttctcaaatagtctgttattaacattataatcatcactt |
41894571 |
T |
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| Q |
311 |
cttttttggcatgtattttttctccccgctaaagc |
345 |
Q |
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| T |
41894570 |
cttttttggcatgtattttttctccccgctaaagc |
41894536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 94 - 345
Target Start/End: Original strand, 36758624 - 36758873
Alignment:
| Q |
94 |
aggcagtttattaagcatgtaggtttgttaaagtcataacctttttagtccacaaatttcgttcgactattttgaaatattccaacgaaacacgatatgg |
193 |
Q |
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| T |
36758624 |
aggcaggttgttaagcaggtaggtttgttacaggcatagcctttttagttcacaaatttcattcagatattttaaaatatttcagtgaaacacagta--- |
36758720 |
T |
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| Q |
194 |
tgatgtcctcactcattttcatttattcgtgctgtttgagtgtactaaagattggacaatgttacaaagtattcatttttctcaaatagtctgttattaa |
293 |
Q |
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|||||||||||| ||||| || |||| || |||| |||||||| ||||||||| |||||||||||||||| ||||||| || || ||||| | |
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| T |
36758721 |
tgatgtcctcacctatttttcttacttcgcgcagtttaagtgtactgtcgattggacagtgttacaaagtattcagttttctcggcaagcctattattca |
36758820 |
T |
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| Q |
294 |
cattataatc-atcacttcttttttggcatgtattttttctccccgctaaagc |
345 |
Q |
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|||| ||||| |||||||||||| |||| |||||| |||||||| |||||||| |
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| T |
36758821 |
cattctaatctatcacttcttttctggcttgtattgtttctcccagctaaagc |
36758873 |
T |
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