View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10501_low_15 (Length: 352)
Name: NF10501_low_15
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 38653177 - 38652869
Alignment:
| Q |
20 |
aggggaaagtgacatttataatatgaaatttagtcgagatataagtaaagctcatcaagtattgttaaagttagagatcaagtgttttctcaacaaaaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38653177 |
aggggaaagtgacatttataatatgaaatttagtcgagatataagtaaaactcatcaagtattgttaaagttagagatcaagtgttttctcaacaaaaaa |
38653078 |
T |
|
| Q |
120 |
aa-----------attagagatcatgtgtgttgtaagaacaacccagctagtaaaataagaacgtagatatgtaaatggcagggnnnnnnnnn--gttgg |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
38653077 |
aataaaaataaaaattagagatcatgtgtgttgtaagaacaacccagctagtaaaataagaacgtagatatgcaaatggcagggtttttttttttgttgg |
38652978 |
T |
|
| Q |
207 |
tgaaggaaatgcaaatggcagggtttaaaatcagaaattctccacatttagtgtatatgagtttaacactagattactcgatccaaaaaataaataaaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38652977 |
tgaaggaaatgcaaatggcagggtttaaaatcagaaattctccacatttagtgtatatgagtttaacactagattacttgatccaaaaaataaataaaat |
38652878 |
T |
|
| Q |
307 |
tagagatca |
315 |
Q |
| |
|
||||||||| |
|
|
| T |
38652877 |
tagagatca |
38652869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University