View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_18 (Length: 342)
Name: NF10501_low_18
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 2245725 - 2245397
Alignment:
| Q |
1 |
gcttcttcttacaagggttcattaaagaagtgaacgaacttgaaattgaagttgaatttgttgtgtataatgaagggtttagtagagatagagattgatt |
100 |
Q |
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| T |
2245725 |
gcttcttcttacaagggttcaccaaagaagtgaacgaacttgaaattgaagttgaatttgttgtgtataatgaaggggttagtagagat------tgatt |
2245632 |
T |
|
| Q |
101 |
tgaaaatgaagacggaacgaatgagccgtttaatcggctttcttcgtagaatttttgtaaaatatctctctggcgaaggtaaacagaggaacctaaaggt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245631 |
tgaaaatgaagaaggaacgaatgagccgtttaatcggctttcttcgtagaatttttgtaaaatatctctctggcgaaggtaaacagaggaacctaaaggt |
2245532 |
T |
|
| Q |
201 |
tcaaaatttgaacagcccaagaaggttgtgctgtctgtgggggtgtttgttgaaggaatatctgagaaaatagggtcaagtgtgtttgttgaacttgata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2245531 |
tcaaaatttgaacagcccaagaaggttgtgctgtctgtggtggtgtttgttgaaggaatatctgagaaaatagagtcaagtgtgtttgttgaacttgata |
2245432 |
T |
|
| Q |
301 |
atatgagatgtgataaacatgacccaatatctctg |
335 |
Q |
| |
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||||||||| |||||||||||| |||||||||||| |
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| T |
2245431 |
atatgagatttgataaacatgatccaatatctctg |
2245397 |
T |
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