View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_19 (Length: 333)
Name: NF10501_low_19
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 14609333 - 14609655
Alignment:
| Q |
11 |
caaaggtacctatggagttggcaatgcatattggcctccagacgatgaaaatggaggtgatggtatgcatcaaggagtatttgattcttctgagaagcct |
110 |
Q |
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| T |
14609333 |
caaaggtacctatggagttggcaatgcatattggcctccagacgatgaaaatggaggtgatggtatgcatcaaggagtatttgattcttctgagaagcct |
14609432 |
T |
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| Q |
111 |
tggaagcctttgtgccgaaaaagatcagttccaaatggcatcataagtccatataggttggttattatatatgcaatatgtaaatgttgtatataactaa |
210 |
Q |
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| T |
14609433 |
tggaagcctttgtgccgaaaaagatcagttccaaatggcatcataagtccatataggttggttattatatatgcaatatgtaaatgttgtatataactaa |
14609532 |
T |
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| Q |
211 |
aaataattactataggattaaatgtatatcttagcgatttagttataattgcatctgattgtgcctatatttcattaatttgcaggttgcttattggtgt |
310 |
Q |
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| T |
14609533 |
aaataattactataggattaaatgtatatcttagcgatttagttataattgcatctgattgtgcctatatttcattaatttgcaggttgcttattggtgt |
14609632 |
T |
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| Q |
311 |
tcgcttagtagtgatgtgcttct |
333 |
Q |
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| T |
14609633 |
tcgcttagtagtaatgtgcttct |
14609655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 14599181 - 14599023
Alignment:
| Q |
11 |
caaaggtacctatggagttggcaatgcatattggcctccagacgatgaaaatggaggtgatggtatgcatcaaggagtatttgattcttctgagaagcct |
110 |
Q |
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| T |
14599181 |
caaaggtacctatggagttggcaatgcttattggcctccagatgattcagatgatgaggctggtctaaatgaaggagtatttgatggttccgagaaacct |
14599082 |
T |
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| Q |
111 |
tggaagcctttgtgccgaaaaagatcagttccaaatggcatcataagtccatataggtt |
169 |
Q |
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| T |
14599081 |
tggaagcctttgtgtagaagaacaccaattccaaatggcatcataactccatataggtt |
14599023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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