View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10501_low_2 (Length: 454)

Name: NF10501_low_2
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10501_low_2
NF10501_low_2
[»] chr2 (22 HSPs)
chr2 (263-442)||(23147700-23147879)
chr2 (263-442)||(23559490-23559669)
chr2 (26-133)||(23150676-23150792)
chr2 (26-133)||(23561933-23562049)
chr2 (163-253)||(23149976-23150066)
chr2 (163-253)||(23561766-23561856)
chr2 (81-133)||(5356463-5356515)
chr2 (94-133)||(15327962-15328001)
chr2 (86-230)||(4959967-4960111)
chr2 (90-134)||(19092681-19092725)
chr2 (82-133)||(24837796-24837847)
chr2 (94-140)||(10887034-10887080)
chr2 (93-140)||(19026360-19026407)
chr2 (90-145)||(22453012-22453067)
chr2 (96-135)||(29568272-29568311)
chr2 (90-133)||(41266396-41266439)
chr2 (90-140)||(23756018-23756068)
chr2 (90-140)||(26159233-26159283)
chr2 (90-140)||(27347123-27347173)
chr2 (90-135)||(23929754-23929799)
chr2 (99-132)||(29109934-29109967)
chr2 (90-135)||(42534320-42534365)
[»] chr8 (17 HSPs)
chr8 (27-230)||(9251352-9251564)
chr8 (89-140)||(9555066-9555117)
chr8 (92-135)||(33273706-33273749)
chr8 (94-135)||(22282305-22282346)
chr8 (94-133)||(13770796-13770835)
chr8 (96-135)||(22906399-22906438)
chr8 (86-131)||(1039173-1039218)
chr8 (90-135)||(7454864-7454909)
chr8 (90-133)||(11709327-11709370)
chr8 (96-135)||(18574226-18574265)
chr8 (100-135)||(23934270-23934305)
chr8 (96-135)||(32009219-32009258)
chr8 (90-140)||(2085942-2085992)
chr8 (90-140)||(17775658-17775708)
chr8 (90-135)||(7999607-7999652)
chr8 (90-135)||(10532989-10533034)
chr8 (94-135)||(31247643-31247684)
[»] chr3 (20 HSPs)
chr3 (26-230)||(3786393-3786610)
chr3 (26-133)||(3824187-3824303)
chr3 (26-140)||(11578913-11579036)
chr3 (94-140)||(12901445-12901491)
chr3 (89-135)||(16841305-16841351)
chr3 (94-135)||(15243070-15243111)
chr3 (90-135)||(19773343-19773388)
chr3 (81-140)||(3559305-3559365)
chr3 (96-135)||(22006450-22006489)
chr3 (96-135)||(22013967-22014006)
chr3 (94-140)||(36602689-36602735)
chr3 (81-134)||(4073197-4073250)
chr3 (81-141)||(36639547-36639607)
chr3 (81-135)||(44635755-44635810)
chr3 (92-126)||(3750340-3750374)
chr3 (94-140)||(23015061-23015107)
chr3 (94-123)||(9860851-9860880)
chr3 (94-135)||(15204049-15204090)
chr3 (94-134)||(23088991-23089031)
chr3 (99-135)||(29049253-29049289)
[»] scaffold0039 (2 HSPs)
scaffold0039 (265-395)||(113755-113885)
scaffold0039 (85-135)||(113583-113633)
[»] scaffold0091 (1 HSPs)
scaffold0091 (81-145)||(897-961)
[»] chr4 (18 HSPs)
chr4 (26-135)||(14332055-14332174)
chr4 (90-133)||(9901899-9901942)
chr4 (90-140)||(12217513-12217563)
chr4 (94-135)||(13033785-13033826)
chr4 (90-135)||(25239652-25239697)
chr4 (27-135)||(34845581-34845698)
chr4 (96-135)||(13861271-13861310)
chr4 (90-140)||(3270496-3270546)
chr4 (94-135)||(4480070-4480111)
chr4 (94-135)||(7865692-7865733)
chr4 (94-135)||(7866856-7866897)
chr4 (90-135)||(12885235-12885280)
chr4 (90-135)||(17282687-17282732)
chr4 (99-135)||(25781840-25781876)
chr4 (90-140)||(10421999-10422049)
chr4 (97-134)||(53446596-53446633)
chr4 (89-133)||(16643683-16643727)
chr4 (99-135)||(27639470-27639506)
[»] chr1 (14 HSPs)
chr1 (86-131)||(27282066-27282111)
chr1 (90-135)||(22186183-22186228)
chr1 (92-133)||(24107004-24107045)
chr1 (94-131)||(31066516-31066553)
chr1 (87-135)||(52193386-52193434)
chr1 (89-140)||(18732316-18732367)
chr1 (94-135)||(23933875-23933916)
chr1 (94-134)||(41438604-41438644)
chr1 (94-133)||(16869929-16869968)
chr1 (90-133)||(19967618-19967661)
chr1 (90-140)||(21815720-21815770)
chr1 (90-140)||(21817949-21817999)
chr1 (90-135)||(8990959-8991004)
chr1 (81-145)||(30893959-30894023)
[»] chr6 (21 HSPs)
chr6 (47-131)||(17728369-17728449)
chr6 (89-135)||(7412313-7412359)
chr6 (27-124)||(6109539-6109645)
chr6 (98-140)||(29095222-29095264)
chr6 (81-140)||(14479947-14480007)
chr6 (26-130)||(10345309-10345421)
chr6 (87-122)||(22607699-22607734)
chr6 (90-140)||(8306014-8306064)
chr6 (89-135)||(31344375-31344421)
chr6 (94-135)||(3876287-3876328)
chr6 (90-135)||(12738452-12738497)
chr6 (90-135)||(15119918-15119963)
chr6 (96-135)||(18735957-18735996)
chr6 (90-141)||(29482542-29482593)
chr6 (90-140)||(4409146-4409196)
chr6 (94-132)||(7099428-7099466)
chr6 (94-132)||(8795164-8795202)
chr6 (90-140)||(14910557-14910607)
chr6 (94-135)||(12936419-12936460)
chr6 (99-135)||(1833901-1833937)
chr6 (96-140)||(7968700-7968744)
[»] chr5 (15 HSPs)
chr5 (90-136)||(5931144-5931190)
chr5 (94-132)||(23927282-23927320)
chr5 (86-130)||(1684530-1684574)
chr5 (94-134)||(31477573-31477613)
chr5 (96-140)||(33622696-33622740)
chr5 (90-140)||(23495301-23495351)
chr5 (90-140)||(36712846-36712896)
chr5 (90-135)||(5590894-5590939)
chr5 (90-135)||(24095288-24095333)
chr5 (81-134)||(31393017-31393070)
chr5 (90-140)||(20899793-20899843)
chr5 (90-135)||(22922239-22922283)
chr5 (26-135)||(28421590-28421708)
chr5 (96-140)||(15620402-15620446)
chr5 (104-132)||(28068231-28068259)
[»] scaffold0140 (1 HSPs)
scaffold0140 (81-132)||(26417-26468)
[»] scaffold0096 (1 HSPs)
scaffold0096 (81-135)||(11059-11114)
[»] scaffold0008 (1 HSPs)
scaffold0008 (90-140)||(253265-253315)
[»] scaffold0280 (1 HSPs)
scaffold0280 (91-140)||(1239-1288)
[»] scaffold0043 (1 HSPs)
scaffold0043 (94-135)||(56796-56837)
[»] chr7 (9 HSPs)
chr7 (90-135)||(18185582-18185627)
chr7 (90-135)||(20093491-20093536)
chr7 (81-145)||(28794214-28794279)
chr7 (90-134)||(29164807-29164851)
chr7 (96-135)||(22703851-22703890)
chr7 (102-140)||(18153081-18153119)
chr7 (90-140)||(21593074-21593124)
chr7 (90-140)||(22705555-22705605)
chr7 (94-135)||(5632833-5632874)
[»] scaffold0213 (1 HSPs)
scaffold0213 (89-132)||(25717-25760)
[»] scaffold0063 (1 HSPs)
scaffold0063 (81-134)||(49413-49467)
[»] scaffold0062 (1 HSPs)
scaffold0062 (99-140)||(10696-10737)
[»] scaffold0023 (1 HSPs)
scaffold0023 (94-135)||(87351-87392)
[»] scaffold0058 (1 HSPs)
scaffold0058 (91-135)||(1564-1608)
[»] scaffold0013 (1 HSPs)
scaffold0013 (90-145)||(37423-37478)
[»] scaffold0362 (1 HSPs)
scaffold0362 (90-140)||(7546-7596)
[»] scaffold0265 (2 HSPs)
scaffold0265 (90-140)||(14810-14860)
scaffold0265 (90-140)||(17039-17089)
[»] scaffold0042 (2 HSPs)
scaffold0042 (105-135)||(74802-74832)
scaffold0042 (96-140)||(68625-68669)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 263 - 442
Target Start/End: Complemental strand, 23147879 - 23147700
Alignment:
Q  263 ccaaagctttcaaagtaaaaaccatgattgccaacggtgacagcatgcgtctccagagccaagtccaacgcatcaaccgcgatggtcaaacgacctctcc 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  23147879 ccaaagctttcaaagtaaaaaccatgattgccaacggtgacagcatgtgcctctagagccaagtccaacgcatcaaccgcgacggtcaaacgacctctcc 23147780  T
Q  363 atctcatgcagccagcccacgacaaggaacctccccgacgagcacctatccaatggcccaggtgcaagatcaacccctct 442  Q
    ||||||||||||||||||||||| |||||| || ||||||||| | ||||||||||||||| ||||||||||||||||||    
T  23147779 atctcatgcagccagcccacgacgaggaacatcaccgacgagctcttatccaatggcccagttgcaagatcaacccctct 23147700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 263 - 442
Target Start/End: Complemental strand, 23559669 - 23559490
Alignment:
Q  263 ccaaagctttcaaagtaaaaaccatgattgccaacggtgacagcatgcgtctccagagccaagtccaacgcatcaaccgcgatggtcaaacgacctctcc 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  23559669 ccaaagctttcaaagtaaaaaccatgattgccaacggtgacagcatgtgcctctagagccaagtccaacgcatcaaccgcgacggtcaaacgacctctcc 23559570  T
Q  363 atctcatgcagccagcccacgacaaggaacctccccgacgagcacctatccaatggcccaggtgcaagatcaacccctct 442  Q
    ||||||||||||||||||||||| |||||| || ||||||||| | ||||||||||||||| ||||||||||||||||||    
T  23559569 atctcatgcagccagcccacgacgaggaacatcaccgacgagctcttatccaatggcccagttgcaagatcaacccctct 23559490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 23150792 - 23150676
Alignment:
Q  26 acacccacctctatataaagc-tactcctcgcagtctccaaggtagaatctttctca--------ccctcatttctgacctctactgacttgagcgtcgg 116  Q
    ||||||||||||||||||||  ||||||||| |||| |||||||||||||||| |||        ||||||||||||||||||| |||||||||||||||    
T  23150792 acacccacctctatataaagggtactcctcgtagtccccaaggtagaatctttgtcatttcttaaccctcatttctgacctctaatgacttgagcgtcgg 23150693  T
Q  117 agtgtctgcaggtacac 133  Q
    |||||||||||||||||    
T  23150692 agtgtctgcaggtacac 23150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 23562049 - 23561933
Alignment:
Q  26 acacccacctctatataaagc-tactcctcgcagtctccaaggtagaatctttctca--------ccctcatttctgacctctactgacttgagcgtcgg 116  Q
    ||||||||||||||||||||  ||||||||| |||| |||||||||||||||| |||        ||||||||||||||||||| |||||||||||||||    
T  23562049 acacccacctctatataaagggtactcctcgtagtccccaaggtagaatctttgtcatttcttaaccctcatttctgacctctaatgacttgagcgtcgg 23561950  T
Q  117 agtgtctgcaggtacac 133  Q
    |||||||||||||||||    
T  23561949 agtgtctgcaggtacac 23561933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 23150066 - 23149976
Alignment:
Q  163 gcttttccaccaccttcaagcattgcatttaagagcactgacaatcactttttgattaggtacgatcagtggcgccctttatgggaataac 253  Q
    ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||||| ||| || | ||||||||||    
T  23150066 gcttttccaccaccttcaaccattgcatttaagagccctgacagtcactttttgatcaggtacgatcagtgccgctctctgtgggaataac 23149976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 23561856 - 23561766
Alignment:
Q  163 gcttttccaccaccttcaagcattgcatttaagagcactgacaatcactttttgattaggtacgatcagtggcgccctttatgggaataac 253  Q
    ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||||| ||| || | ||||||||||    
T  23561856 gcttttccaccaccttcaaccattgcatttaagagccctgacagtcactttttgatcaggtacgatcagtgccgctctctgtgggaataac 23561766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 5356515 - 5356463
Alignment:
Q  81 accctcatttctgacctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  5356515 acccccatttttgacctctactgactggagcgtcggagtgtctgcaggtacac 5356463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 15327962 - 15328001
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15327962 acctctactgacttgagcgtcggagtgtctgcaggtacac 15328001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 230
Target Start/End: Complemental strand, 4960111 - 4959967
Alignment:
Q  86 catttctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgccccgccgtccagtacagaaaatgatgcttttccaccaccttcaagcat 185  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||||| | ||||    ||||| ||  ||| ||| || |||||||||||  ||| ||     
T  4960111 catttcttacctctactgacttgagcgtcagagtgtctgtaggtacaccccccccctgttccagcactcaaactgacgcgtttccaccaccaacaaccac 4960012  T
Q  186 tgcatttaagagcactgacaatcactttttgattaggtacgatca 230  Q
      |||| |||||||  ||||||||| || |||| |||||||||||    
T  4960011 cacattaaagagcatcgacaatcaccttctgatcaggtacgatca 4959967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 19092725 - 19092681
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacaca 134  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||    
T  19092725 tctgatctctactgacttgagcgttggagtgtctgcaggtacaca 19092681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 24837796 - 24837847
Alignment:
Q  82 ccctcatttctgacctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    ||||||||| | | ||||||||||||||||||||||||| ||||||||||||    
T  24837796 ccctcatttataaactctactgacttgagcgtcggagtgcctgcaggtacac 24837847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 10887034 - 10887080
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||    
T  10887034 acctctactgacttgagcatcggagtgtctgcatgtacacacacccc 10887080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 19026407 - 19026360
Alignment:
Q  93 gacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    |||||||||| |||||||| |||||||||| |||||||||||| ||||    
T  19026407 gacctctacttacttgagcatcggagtgtccgcaggtacacacccccc 19026360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 22453012 - 22453067
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgccccgccgt 145  Q
    ||||| || |||||||||||| ||||||||| |||||||||||||| || ||||||    
T  22453012 tctgatctatactgacttgagggtcggagtgcctgcaggtacacactccacgccgt 22453067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 29568311 - 29568272
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  29568311 ctctacttacttgagcatcggagtgtctgcaggtacacac 29568272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 41266396 - 41266439
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||    
T  41266396 tctgatctctacttacttgagcgtcggagtgcctgcaggtacac 41266439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 23756018 - 23756068
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||||| ||||    
T  23756018 tctgatctctacttacttgagcgtcagagtgcctgcaggtacacacccccc 23756068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 26159233 - 26159283
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| ||||||||||||||||| |||||| ||||||| ||||    
T  26159233 tctgatctctacttacttgagcgtcggagtgcctgcagatacacacccccc 26159283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 27347173 - 27347123
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||||||||||||||||||||| ||  |||||||||| ||||    
T  27347173 tctgatctctactgacttgagcgtcggagtgcctataggtacacacacccc 27347123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 23929799 - 23929754
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||||||    
T  23929799 tctgatctctacttacttgagcgtcagagtgcctgcaggtacacac 23929754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 29109967 - 29109934
Alignment:
Q  99 tactgacttgagcgtcggagtgtctgcaggtaca 132  Q
    ||||||||||||| ||||||||||||||||||||    
T  29109967 tactgacttgagcatcggagtgtctgcaggtaca 29109934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 42534320 - 42534365
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||| |||||||||||||||||||| ||||| |||||    
T  42534320 tctgatctctacttacttgagcgtcggagtgtctacaggtgcacac 42534365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 9251564 - 9251352
Alignment:
Q  27 cacccacctctatataaagct-actcctcgcagtctccaaggtagaatctttctca--------ccctcatttctgacctctactgacttgagcgtcgga 117  Q
    |||||||||||||||||||   ||||||||||||| | ||| ||||||||||||||        ||||||||||||||||||| ||||||||||||||||    
T  9251564 cacccacctctatataaaggggactcctcgcagtcccaaagatagaatctttctcatctcttaaccctcatttctgacctctattgacttgagcgtcgga 9251465  T
Q  118 gtgtctgcaggtacacacgccccgccg-tccagtacagaaaatgatgcttttccaccaccttcaagcattgcatttaagagcactgacaatcactttttg 216  Q
    |||||||||||||||||| || ||||| || || ||  ||| ||| ||  ||||||||||||||| ||  ||||| ||||||||||||| |||| || ||    
T  9251464 gtgtctgcaggtacacac-cctcgccgttctagcactcaaattgacgcacttccaccaccttcaaccaccgcattaaagagcactgacagtcacattctg 9251366  T
Q  217 attaggtacgatca 230  Q
    |||| |||||||||    
T  9251365 attaagtacgatca 9251352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 9555066 - 9555117
Alignment:
Q  89 ttctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  9555066 ttctgaactctactgacttgagcgtcggagtgtatgcaggtacacacccccc 9555117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 33273706 - 33273749
Alignment:
Q  92 tgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  33273706 tgacctctacttacttgagcgtcggagtgtctgcaggtacacac 33273749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 22282305 - 22282346
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  22282305 acctctactgacttgagcgtcagagtgtctgcaggtacacac 22282346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 13770796 - 13770835
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  13770796 acctctactgacttgagcgtcggagtgtctgcaagtacac 13770835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 22906399 - 22906438
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  22906399 ctctactgacttgagcgtcggagtgtcttcaggtacacac 22906438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 1039173 - 1039218
Alignment:
Q  86 catttctgacctctactgacttgagcgtcggagtgtctgcaggtac 131  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||    
T  1039173 catttttgacctctactgacttgagcgtcagagtgtttgcaggtac 1039218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 7454864 - 7454909
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  7454864 tctgatctctacttacttgagcgtcggagtgcctgcaggtacacac 7454909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 11709370 - 11709327
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||    
T  11709370 tctgatctctactgacttgagcgtcggggtgcctgcaggtacac 11709327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 18574226 - 18574265
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  18574226 ctctacttacttgagcgtcggagtgtttgcaggtacacac 18574265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 23934305 - 23934270
Alignment:
Q  100 actgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||||||| |||||||||||||||||||    
T  23934305 actgacttgagcgtcgaagtgtctgcaggtacacac 23934270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 32009219 - 32009258
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  32009219 ctctacttacttgagcgtcggagtgcctgcaggtacacac 32009258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 2085942 - 2085992
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| |||||||| |||||||| |||||||||||||| ||||    
T  2085942 tctgatctctacttacttgagcatcggagtgcctgcaggtacacacccccc 2085992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 17775708 - 17775658
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| |||||||||||| |||| |||||||||||||| ||||    
T  17775708 tctgatctctacttacttgagcgtcgaagtgcctgcaggtacacacccccc 17775658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 7999652 - 7999607
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| |||||||||||||||| ||||||||  |||||||||||||    
T  7999652 tctgatctctactgacttgagcatcggagtgcatgcaggtacacac 7999607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 10532989 - 10533034
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||||||    
T  10532989 tctgatctctacttacttgagcgtctgagtgcctgcaggtacacac 10533034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 31247643 - 31247684
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||||||||||| ||| |||||||| |||||||||||    
T  31247643 acctctactgacttgagtgtcagagtgtctacaggtacacac 31247684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 3786610 - 3786393
Alignment:
Q  26 acacccacctctatataaagct-actcctcgcagtctccaaggtagaatctttctca--------ccctcatttctgacctctactgacttgagcgtcgg 116  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||||||| |||||        ||| |||||||||||||||||||||||| ||||||    
T  3786610 acacccacctctatataaaggggactcctcgcagtccccaaggtagaatctctctcatctcttaacccccatttctgacctctactgacttgaccgtcgg 3786511  T
Q  117 agtgtctgcaggtaca---cacgccccgccg-tccagtacagaaaatgatgcttttccaccaccttcaagcattgcatttaagagcactgacaatcactt 212  Q
    ||||||||||||||||   | | |||||||| || |||  | ||| ||| || |||||||||||||||| |   |||||||||||||| |||| |||| |    
T  3786510 agtgtctgcaggtacacccccctccccgccgttctagtgtacaaactgacgcatttccaccaccttcaacctccgcatttaagagcaccgacattcacct 3786411  T
Q  213 tttgattaggtacgatca 230  Q
    | |||| |||||||||||    
T  3786410 tctgatcaggtacgatca 3786393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 3824303 - 3824187
Alignment:
Q  26 acacccacctctatataaagct-actcctcgcagtctccaaggtagaatctttctca--------ccctcatttctgacctctactgacttgagcgtcgg 116  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||||||| |||||        ||| |||||||||||||||||||||||| ||||||    
T  3824303 acacccacctctatataaaggggactcctcgcagtccccaaggtagaatctctctcatctcttaacccccatttctgacctctactgacttgaccgtcgg 3824204  T
Q  117 agtgtctgcaggtacac 133  Q
    |||||||||||||||||    
T  3824203 agtgtctgcaggtacac 3824187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 11578913 - 11579036
Alignment:
Q  26 acacccacctctatataaagct-actcctcgcagtctccaaggtagaatctttctcacc--------ctcatttctgacctctactgacttgagcgtcgg 116  Q
    ||||||||||||||||||||   |||||||||| || || ||||||||||| ||||| |        || |||||||||||||| ||||||||||||||     
T  11578913 acacccacctctatataaaggggactcctcgcaatccccgaggtagaatctctctcagctattaatccttatttctgacctctattgacttgagcgtcga 11579012  T
Q  117 agtgtctgcaggtacacacgcccc 140  Q
    |||||||||| |||||||| ||||    
T  11579013 agtgtctgcaagtacacacacccc 11579036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 12901445 - 12901491
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  12901445 acctctacttacttgagcgtcggagtgtctgcaggtacacacacccc 12901491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 16841305 - 16841351
Alignment:
Q  89 ttctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  16841305 ttctgaactctactgacttgagcgtcggagtgtctgtaggtacacac 16841351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 15243070 - 15243111
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  15243070 acctctacttacttgagcgtcggagtgtctgcaggtacacac 15243111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 19773388 - 19773343
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  19773388 tctgatctctactgacttgagcgtctgagtgtctgcaggtacacac 19773343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 3559305 - 3559365
Alignment:
Q  81 accctcatt-tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||| ||||    
T  3559305 accctcattctctgatctctactaacttgagcgtcagagtgtctgcaggtacacactcccc 3559365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 22006489 - 22006450
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  22006489 ctctactgacttcagcgtcggagtgtctgcaggtacacac 22006450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 22014006 - 22013967
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  22014006 ctctactgacttcagcgtcggagtgtctgcaggtacacac 22013967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 36602689 - 36602735
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  36602689 acctctacttacttgagcgtcgcagtgtctgcaggtacacacccccc 36602735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 4073197 - 4073250
Alignment:
Q  81 accctcatttctgacctctactgacttgagcgtcggagtgtctgcaggtacaca 134  Q
    |||||||||||| | || |||||||||||||||||||||| ||||| |||||||    
T  4073197 accctcatttctaaactttactgacttgagcgtcggagtgcctgcatgtacaca 4073250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 36639607 - 36639547
Alignment:
Q  81 accctcatttctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgccccg 141  Q
    |||||| ||||| | ||||||| |||||||||||| |||| |||||||||||||| |||||    
T  36639607 accctcgtttctaaactctactaacttgagcgtcgaagtgcctgcaggtacacaccccccg 36639547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 44635810 - 44635755
Alignment:
Q  81 accctcatt-tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||| ||||| |||||||| |||||||||||||||| ||||| ||||||||    
T  44635810 accctcattctctgatctctactggcttgagcgtcggagtgcctgcatgtacacac 44635755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 3750340 - 3750374
Alignment:
Q  92 tgacctctactgacttgagcgtcggagtgtctgca 126  Q
    |||||||||||||||||||||||| ||||||||||    
T  3750340 tgacctctactgacttgagcgtcgaagtgtctgca 3750374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 23015061 - 23015107
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  23015061 acctctacttacttgagcgtcagagtgtctgtaggtacacacacccc 23015107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 9860851 - 9860880
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtct 123  Q
    ||||||||||||||||||||||||||||||    
T  9860851 acctctactgacttgagcgtcggagtgtct 9860880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 15204049 - 15204090
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  15204049 acctctacttacttgagcgtcagagtgtctgcagctacacac 15204090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 23088991 - 23089031
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacaca 134  Q
    |||||||||||||||||| ||||||||| |||| |||||||    
T  23088991 acctctactgacttgagcatcggagtgtttgcatgtacaca 23089031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 29049253 - 29049289
Alignment:
Q  99 tactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||||||| |||| |||||||||||||||    
T  29049253 tactgacttgagcgtcagagtatctgcaggtacacac 29049289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 265 - 395
Target Start/End: Original strand, 113755 - 113885
Alignment:
Q  265 aaagctttcaaagtaaaaaccatgattgccaacggtgacagcatgcgtctccagagccaagtccaacgcatcaaccgcgatggtcaaacgacctctccat 364  Q
    ||||||||| || |||||||||||| |  | |||||| ||   |||| ||||||||| ||||||| |||||||||||||| ||||||||  | |||||||    
T  113755 aaagctttctaactaaaaaccatgacttactacggtgccaatctgcgcctccagagcaaagtccaccgcatcaaccgcgacggtcaaacctcgtctccat 113854  T
Q  365 ctcatgcagccagcccacgacaaggaacctc 395  Q
    ||| ||||||||||||||||  |||||||||    
T  113855 ctcctgcagccagcccacgaagaggaacctc 113885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 113583 - 113633
Alignment:
Q  85 tcatttctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||| | ||| |||| ||||||||||||||||||||||||| |||||||    
T  113583 tcatttattaccactacagacttgagcgtcggagtgtctgcagatacacac 113633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 961 - 897
Alignment:
Q  81 accctcatttctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgccccgccgt 145  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  961 acccccatttctgacctctacttacttgagcgtcggagtgtctgcaggtacacgccccccgccgt 897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 14332055 - 14332174
Alignment:
Q  26 acacccacctctatataaa-gctactcctcgcagtctccaaggtagaatctttctca---------ccctcatttctgacctctactgacttgagcgtcg 115  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||||||||| |||||         | | |||||||||||||||||||||| |||||||    
T  14332055 acacccacctctatataaaagggactcctcgcagtccccaaggtagaatctctctcatttcttaacctcccatttctgacctctactgacttaagcgtcg 14332154  T
Q  116 gagtgtctgcaggtacacac 135  Q
    ||||||||| ||||||||||    
T  14332155 gagtgtctgtaggtacacac 14332174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 9901899 - 9901942
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  9901899 tctgatctctactgacttgagcgtcggagtgtctgcaggtacac 9901942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 12217563 - 12217513
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  12217563 tctgatctctactgacttgagcgtcgaagtgtctgcaggtacacacacccc 12217513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 13033785 - 13033826
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  13033785 acctctactgacttgagcgtcagagtgtctgcaggtacacac 13033826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 25239697 - 25239652
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  25239697 tctgatctctactgacttgagcgtcggagtgtctgtaggtacacac 25239652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 34845581 - 34845698
Alignment:
Q  27 cacccacctctatataaagcta-ctcctcgcagtctccaaggtagaatctttctcac--------cctcatttctgacctctactgacttgagcgtcgga 117  Q
    |||||||||||||||||||    |||||||||||| |||||||||||||| ||||||        |  ||||||||||||||||| ||||||||||| ||    
T  34845581 cacccacctctatataaagggggctcctcgcagtccccaaggtagaatctctctcacttctaaaccgccatttctgacctctactaacttgagcgtctga 34845680  T
Q  118 gtgtctgcaggtacacac 135  Q
     ||| |||||||||||||    
T  34845681 ttgtttgcaggtacacac 34845698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 13861310 - 13861271
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  13861310 ctctactgacttgagcgtcggagtgcctgcaggtacacac 13861271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 3270546 - 3270496
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||| ||||    
T  3270546 tctgatctctgctgacttgagcgtcggagtgcctgcaggtacacacccccc 3270496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 4480111 - 4480070
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  4480111 acctctactaacttgagcgtcggagtgtctacaggtacacac 4480070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 7865692 - 7865733
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  7865692 acctctactgacttgagcttcagagtgtctgcaggtacacac 7865733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 7866856 - 7866897
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  7866856 acctctactgacttgagcttcagagtgtctgcaggtacacac 7866897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 12885280 - 12885235
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  12885280 tctgatctctacttacttgagcgtcggagtgcctgcaggtacacac 12885235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 17282687 - 17282732
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  17282687 tctgatctctactgacttgagcgtcggagtggctgcaagtacacac 17282732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 25781840 - 25781876
Alignment:
Q  99 tactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| |||||||||||||||||||||||||||||||    
T  25781840 tactggcttgagcgtcggagtgtctgcaggtacacac 25781876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 10422049 - 10421999
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| ||||||||||||||||| |||||||||| ||| ||||    
T  10422049 tctgatctctactaacttgagcgtcggagtgcctgcaggtacccacccccc 10421999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 53446633 - 53446596
Alignment:
Q  97 tctactgacttgagcgtcggagtgtctgcaggtacaca 134  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  53446633 tctactgacttgagtatcggagtgtctgcaggtacaca 53446596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 16643683 - 16643727
Alignment:
Q  89 ttctgacctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    |||||| ||||||||||||||||||| |||||| || ||||||||    
T  16643683 ttctgaactctactgacttgagcgtcagagtgtatgtaggtacac 16643727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 27639506 - 27639470
Alignment:
Q  99 tactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  27639506 tactgacttgagcgtcggggtgtctgcaagtacacac 27639470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 27282111 - 27282066
Alignment:
Q  86 catttctgacctctactgacttgagcgtcggagtgtctgcaggtac 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27282111 catttctgacctctactgacttgagcgtcggagtgtctgcaggtac 27282066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 22186183 - 22186228
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  22186183 tctgatctctattgacttgagcgtcggagtgtctgcaggtacacac 22186228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 24107004 - 24107045
Alignment:
Q  92 tgacctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  24107004 tgacctctactgacttgagcgtcggagtgtcagcaggtacac 24107045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 31066516 - 31066553
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtac 131  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31066516 acctctactgacttgagcgtcggagtgtctgcaggtac 31066553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 52193386 - 52193434
Alignment:
Q  87 atttctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  52193386 atttctgaactctactgacttgagcgtcagagtgtctgcaagtacacac 52193434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 18732367 - 18732316
Alignment:
Q  89 ttctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||| ||||    
T  18732367 ttctgaactctactgacttgagcatcgtagtgtctgcaggtacacactcccc 18732316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 23933875 - 23933916
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  23933875 acctctattgacttgagcgacggagtgtctgcaggtacacac 23933916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 41438644 - 41438604
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacaca 134  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  41438644 acctctactgacttaagcgtcggagtgtctgcaggcacaca 41438604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 16869968 - 16869929
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  16869968 acctctactggcttgagcatcggagtgtctgcaggtacac 16869929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 19967618 - 19967661
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacac 133  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||    
T  19967618 tctgatctctacttacttgagcgtcggagtgcctgcaggtacac 19967661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 21815720 - 21815770
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||| |||||||||||||||| |||| |||||||||||||| ||||    
T  21815720 tctgatctcaactgacttgagcgtcgaagtgcctgcaggtacacacccccc 21815770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 21817949 - 21817999
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| |||||||||||||||| |||||||| ||||| |||||||| ||||    
T  21817949 tctgatctctactgacttgagcatcggagtgcctgcaagtacacacccccc 21817999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 8990959 - 8991004
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||||| ||||||||||||||  ||||||||||||||    
T  8990959 tctgatctctactgatttgagcgtcggagtacctgcaggtacacac 8991004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 30894023 - 30893959
Alignment:
Q  81 accctcatt-tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgccccgccgt 145  Q
    ||||||||| ||||| |||||||||||| || |||| |||||||||| |||||||| |||||||||    
T  30894023 accctcattctctgatctctactgacttaagtgtcgaagtgtctgcacgtacacac-ccccgccgt 30893959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 17728449 - 17728369
Alignment:
Q  47 tactcctcgcagtctccaaggtagaatctttctcaccctcatttctgacctctactgacttgagcgtcggagtgtctgcaggtac 131  Q
    ||||||||| |||| |||||||||||||| ||    || ||||||||||||||||||||||||||||| |||||||| |||||||    
T  17728449 tactcctcgtagtccccaaggtagaatctctc----ccccatttctgacctctactgacttgagcgtcagagtgtctacaggtac 17728369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 7412359 - 7412313
Alignment:
Q  89 ttctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  7412359 ttctgaactctactgacttgagcgtcggagtgtctgcaggtacacac 7412313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 6109539 - 6109645
Alignment:
Q  27 cacccacctctatataaagct-actcctcgcagtctccaaggtagaatctttctcac--------cctcatttctgacctctactgacttgagcgtcgga 117  Q
    |||||||||||||||||||   ||||||||||||| ||||||||||| || ||||||        |  ||||||||||||||||||||||||||||||||    
T  6109539 cacccacctctatataaaggggactcctcgcagtccccaaggtagaacctctctcacttctaaatctccatttctgacctctactgacttgagcgtcgga 6109638  T
Q  118 gtgtctg 124  Q
    |||||||    
T  6109639 gtgtctg 6109645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 29095222 - 29095264
Alignment:
Q  98 ctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  29095222 ctactgacttgagcgtcggagtgtctgcaggtacacacccccc 29095264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 14480007 - 14479947
Alignment:
Q  81 accctcatt-tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||||| ||||| |||||||||||| |||||||||||| |||||||||||||| ||||    
T  14480007 accctcattctctgatctctactgacttcagcgtcggagtgcctgcaggtacacacccccc 14479947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 10345421 - 10345309
Alignment:
Q  26 acacccacctctatataaagctactcctcgcagtctccaaggtagaatctttctca--------ccctcatttctgacctctactgacttgagcgtcgga 117  Q
    |||| ||||| |||||||||  |||||||||| | ||||||||||||||| |||||        ||| ||||| |||| |||||| ||||||| ||||||    
T  10345421 acactcacctttatataaagggactcctcgcattttccaaggtagaatctctctcatctcttaacccccatttatgacttctacttacttgagtgtcgga 10345322  T
Q  118 gtgtctgcaggta 130  Q
    |||||||||||||    
T  10345321 gtgtctgcaggta 10345309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 22607734 - 22607699
Alignment:
Q  87 atttctgacctctactgacttgagcgtcggagtgtc 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  22607734 atttctgacctctactgacttgagcgtcggagtgtc 22607699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 8306064 - 8306014
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||| ||||    
T  8306064 tctgatctctacttacttgagcgtcggagtgcctgcaggtacacacccccc 8306014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 31344375 - 31344421
Alignment:
Q  89 ttctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||||    
T  31344375 ttctgaactctactgacttgagcgtcggagtgtatgcatgtacacac 31344421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 3876328 - 3876287
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||||||||||| |||||| ||||||||||||||    
T  3876328 acctctactgacttgagcgttggagtgcctgcaggtacacac 3876287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 12738497 - 12738452
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  12738497 tctgatctctacttacttgagcgtcggagtgcctgcaggtacacac 12738452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 15119918 - 15119963
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  15119918 tctgatctctacttacttgagcgtcggagtgcctgcaggtacacac 15119963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 18735996 - 18735957
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  18735996 ctctacttacttgagcgtcggagtgtctgtaggtacacac 18735957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 29482593 - 29482542
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgccccg 141  Q
    ||||| ||||||| ||||||||||||||| | |||||||||||||| |||||    
T  29482593 tctgatctctacttacttgagcgtcggagcgcctgcaggtacacaccccccg 29482542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 4409196 - 4409146
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| ||||||| ||||||||| |||||||||||||| ||||    
T  4409196 tctgatctctacttacttgagtgtcggagtgcctgcaggtacacacacccc 4409146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 7099428 - 7099466
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtaca 132  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  7099428 acctctactgacttgagcgttagagtgtctgcaggtaca 7099466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 8795202 - 8795164
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtaca 132  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  8795202 acctctactgacttgagcgttagagtgtctgcaggtaca 8795164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 14910607 - 14910557
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| ||||||||||||||||| ||||| |||||||| ||||    
T  14910607 tctgatctctacttacttgagcgtcggagtgcctgcatgtacacacccccc 14910557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 12936419 - 12936460
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||| ||||||||||||||||||||||| || |||||    
T  12936419 acctctactaacttgagcgtcggagtgtctgcaagtgcacac 12936460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 1833901 - 1833937
Alignment:
Q  99 tactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  1833901 tactgacttgagtgtcggtgtgtctgcaggtacacac 1833937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 7968700 - 7968744
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||| ||||||||||||||||| ||||||||| |||| ||||    
T  7968700 ctctacttacttgagcgtcggagtgcctgcaggtagacacccccc 7968744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 5931190 - 5931144
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacg 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  5931190 tctgatctctactgacttgagcgtcggagtgtctgcaggtacacacg 5931144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 23927282 - 23927320
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtaca 132  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23927282 acctctactgacttgagcgtcggagtgtctgcaggtaca 23927320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 1684530 - 1684574
Alignment:
Q  86 catttctgacctctactgacttgagcgtcggagtgtctgcaggta 130  Q
    |||||||||||||||||| |||||||||| |||||||||||||||    
T  1684530 catttctgacctctactggcttgagcgtcagagtgtctgcaggta 1684574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 31477573 - 31477613
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacaca 134  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  31477573 acctctacttacttgagcgtcggagtgtctgcaggtacaca 31477613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 33622696 - 33622740
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  33622696 ctctactgacttgagcgtcggagtgtctgcaagtacacacccccc 33622740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 23495351 - 23495301
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| |||||||||||||||||| |||||| |||||||||||||| ||||    
T  23495351 tctgatctctactgacttgagcgttggagtgcctgcaggtacacacccccc 23495301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 36712846 - 36712896
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||| ||||    
T  36712846 tctgatctctactaacttgagcgtcggagtgcctgcaggtacacacccccc 36712896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 5590894 - 5590939
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  5590894 tctgatctctactgacttgagcgtcggagtgcctgcaagtacacac 5590939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 24095333 - 24095288
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||    
T  24095333 tctgatctctactgacttgagcgtcggagtgtctgcatgcacacac 24095288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 31393070 - 31393017
Alignment:
Q  81 accctcatttctgacctctactgacttgagcgtcggagtgtctgcaggtacaca 134  Q
    |||| ||||| | ||||||||| |||||||||||| ||||||||||||||||||    
T  31393070 acccccatttttaacctctactaacttgagcgtcgaagtgtctgcaggtacaca 31393017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 20899793 - 20899843
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||||||||||||||||||||| ||  |||||||||| ||||    
T  20899793 tctgatctctactgacttgagcgtcggagtgcctctaggtacacactcccc 20899843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 22922239 - 22922283
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  22922239 tctgatctctact-acttgagcgtcggagtgcctgcaggtacacac 22922283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 28421590 - 28421708
Alignment:
Q  26 acacccacctctatataaagct-actcctcgcagtctccaaggtagaatct---ttctc-----accctcatttctgacctct-actgacttgagcgtcg 115  Q
    ||||||||||||||||||||   |||| |||||||| ||||||||||||||   |||||     |||| |||| |||| |||| |||||||||||| |||    
T  28421590 acacccacctctatataaaggggactcttcgcagtcaccaaggtagaatctatcttctctctaaacccccatt-ctgatctcttactgacttgagcatcg 28421688  T
Q  116 gagtgtctgcaggtacacac 135  Q
    |||||||||| |||||||||    
T  28421689 gagtgtctgccggtacacac 28421708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 15620402 - 15620446
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||| ||||||||||||||||| ||||| |||||||| ||||    
T  15620402 ctctacttacttgagcgtcggagtgcctgcatgtacacacccccc 15620446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 28068231 - 28068259
Alignment:
Q  104 acttgagcgtcggagtgtctgcaggtaca 132  Q
    |||||||||||||||||||||||||||||    
T  28068231 acttgagcgtcggagtgtctgcaggtaca 28068259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 26468 - 26417
Alignment:
Q  81 accctcatttctgacctctactgacttgagcgtcggagtgtctgcaggtaca 132  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  26468 acccccatttctgacctctactgaattgagtgtcggagtgtctgcaggtaca 26417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 11059 - 11114
Alignment:
Q  81 accctcatt-tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  11059 accctcattctctgatctctactgacttgagcgtcggagtgcctgcaggtacacac 11114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 253315 - 253265
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  253315 tctgatctctacttacttgagcgtcggagtgtctgcaggtacacacccccc 253265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 1239 - 1288
Alignment:
Q  91 ctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    |||| ||||||||||||||||||||||||| |||||||||||||| ||||    
T  1239 ctgatctctactgacttgagcgtcggagtgcctgcaggtacacacccccc 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 56796 - 56837
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  56796 acctctactgacttgagcgtcgaagtgtctgcaggtacacac 56837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 18185627 - 18185582
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  18185627 tctgatctctactgacttgagcgtcggagtgcctgcaggtacacac 18185582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 20093536 - 20093491
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  20093536 tctgatctctactgacttgagcgtcggagtgtctacaggtacacac 20093491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 28794214 - 28794279
Alignment:
Q  81 accctcatt-tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgccccgccgt 145  Q
    ||||||||| ||||| |||||||||||||||||||||||||  ||||||||||||  |||||||||    
T  28794214 accctcattctctgatctctactgacttgagcgtcggagtgcgtgcaggtacacatcccccgccgt 28794279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 29164851 - 29164807
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacaca 134  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||    
T  29164851 tctgatctctacttacttgagcgtcggagtctctgcaggtacaca 29164807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 22703890 - 22703851
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  22703890 ctctacttacttgagcgtcggagtgcctgcaggtacacac 22703851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 18153119 - 18153081
Alignment:
Q  102 tgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  18153119 tgacttgagcgtcggagtgcctgcaggtacacacccccc 18153081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 21593074 - 21593124
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| |||||||||||||||| |||||||| ||||| |||||||| ||||    
T  21593074 tctgatctctactgacttgagcttcggagtgcctgcaagtacacacccccc 21593124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 22705605 - 22705555
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| ||||||| ||||||||| |||||||||||||| ||||    
T  22705605 tctgatctctacttacttgagtgtcggagtgcctgcaggtacacacccccc 22705555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 5632833 - 5632874
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||||||||||||||| |||||||| | |||||||||    
T  5632833 acctctactgacttgagcgtcagagtgtctaccggtacacac 5632874  T

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Target: scaffold0213 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 25760 - 25717
Alignment:
Q  89 ttctgacctctactgacttgagcgtcggagtgtctgcaggtaca 132  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  25760 ttctgacctctattgacttgagcgtcggaatgtctgcaggtaca 25717  T

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Target: scaffold0063 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 49413 - 49467
Alignment:
Q  81 accctcatt-tctgacctctactgacttgagcgtcggagtgtctgcaggtacaca 134  Q
    ||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||    
T  49413 accctcattctctgatctctactgacttgagcgtctgagtgcctgcaggtacaca 49467  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 10696 - 10737
Alignment:
Q  99 tactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  10696 tactgacttgagcgtcggagtgtctacaggtacacacacccc 10737  T

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Target: scaffold0023 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 87392 - 87351
Alignment:
Q  94 acctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  87392 acctctactaacttgagcgtcggagtgtttgcaggtacacac 87351  T

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Target: scaffold0058 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 1608 - 1564
Alignment:
Q  91 ctgacctctactgacttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||| ||||||| ||||||||||||||||| ||||||||||||||    
T  1608 ctgatctctacttacttgagcgtcggagtgcctgcaggtacacac 1564  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 37423 - 37478
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgccccgccgt 145  Q
    ||||| |||||||||||||||||||| || | |||||||||||||  |||||||||    
T  37423 tctgatctctactgacttgagcgtcgaagcgcctgcaggtacacatcccccgccgt 37478  T

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Target: scaffold0362 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 7546 - 7596
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||||||| ||||||||||||||||| || ||||||||||| ||||    
T  7546 tctgatctctactaacttgagcgtcggagtgcctacaggtacacacccccc 7596  T

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Target: scaffold0265 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 14860 - 14810
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| |||||||||||||||| |||||||| ||||| |||||||| ||||    
T  14860 tctgatctctactgacttgagcatcggagtgcctgcaagtacacacccccc 14810  T

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Target: scaffold0265; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 17089 - 17039
Alignment:
Q  90 tctgacctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||| ||| |||||||||||||||| |||| |||||||||||||| ||||    
T  17089 tctgatctcaactgacttgagcgtcgaagtgcctgcaggtacacacccccc 17039  T

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Target: scaffold0042 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 135
Target Start/End: Complemental strand, 74832 - 74802
Alignment:
Q  105 cttgagcgtcggagtgtctgcaggtacacac 135  Q
    |||||||||||||||||||||||||||||||    
T  74832 cttgagcgtcggagtgtctgcaggtacacac 74802  T

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Target: scaffold0042; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 68669 - 68625
Alignment:
Q  96 ctctactgacttgagcgtcggagtgtctgcaggtacacacgcccc 140  Q
    ||||||| |||||||| | ||||||||||||||||||||| ||||    
T  68669 ctctacttacttgagcattggagtgtctgcaggtacacacccccc 68625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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