View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10501_low_20 (Length: 332)

Name: NF10501_low_20
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10501_low_20
NF10501_low_20
[»] chr4 (14 HSPs)
chr4 (1-314)||(33997867-33998180)
chr4 (30-88)||(8747691-8747749)
chr4 (30-88)||(8749046-8749104)
chr4 (30-88)||(8896953-8897011)
chr4 (30-90)||(48157678-48157738)
chr4 (32-88)||(40168639-40168695)
chr4 (32-95)||(9397437-9397500)
chr4 (32-87)||(40169781-40169836)
chr4 (32-88)||(1961172-1961228)
chr4 (33-89)||(9178634-9178690)
chr4 (32-92)||(25011731-25011791)
chr4 (32-88)||(31435854-31435909)
chr4 (32-88)||(55780387-55780443)
chr4 (32-88)||(55844567-55844623)
[»] chr2 (9 HSPs)
chr2 (1-90)||(27553778-27553867)
chr2 (1-88)||(27552452-27552539)
chr2 (30-88)||(12812836-12812894)
chr2 (32-90)||(28851674-28851732)
chr2 (32-88)||(10851913-10851969)
chr2 (41-89)||(24192244-24192291)
chr2 (32-88)||(45413479-45413535)
chr2 (32-90)||(1389231-1389289)
chr2 (32-88)||(45412335-45412391)
[»] chr7 (5 HSPs)
chr7 (30-90)||(35080281-35080341)
chr7 (30-88)||(9805426-9805484)
chr7 (30-88)||(35081601-35081659)
chr7 (39-88)||(23621990-23622039)
chr7 (32-88)||(12961984-12962040)
[»] chr6 (8 HSPs)
chr6 (30-90)||(22417656-22417716)
chr6 (1-93)||(22418908-22419000)
chr6 (32-96)||(6978139-6978203)
chr6 (32-88)||(20409067-20409123)
chr6 (33-88)||(12181595-12181650)
chr6 (40-90)||(10120173-10120223)
chr6 (32-69)||(15888990-15889027)
chr6 (32-88)||(20410219-20410275)
[»] chr3 (11 HSPs)
chr3 (30-90)||(10584082-10584142)
chr3 (30-90)||(32829738-32829798)
chr3 (32-90)||(26722531-26722589)
chr3 (32-88)||(26723906-26723962)
chr3 (30-90)||(51219460-51219520)
chr3 (30-88)||(51220602-51220660)
chr3 (30-88)||(32831090-32831148)
chr3 (30-88)||(53157176-53157233)
chr3 (32-88)||(21326320-21326376)
chr3 (32-88)||(40630627-40630683)
chr3 (32-88)||(54539500-54539556)
[»] chr5 (11 HSPs)
chr5 (30-88)||(124529-124587)
chr5 (35-88)||(3597323-3597376)
chr5 (30-90)||(5504136-5504196)
chr5 (32-90)||(3598924-3598982)
chr5 (30-88)||(5502918-5502975)
chr5 (30-88)||(121349-121407)
chr5 (30-89)||(14189663-14189722)
chr5 (30-88)||(14190487-14190545)
chr5 (32-90)||(17414542-17414600)
chr5 (36-90)||(17415695-17415749)
chr5 (32-88)||(8061856-8061912)
[»] chr1 (13 HSPs)
chr1 (30-88)||(46312065-46312123)
chr1 (1-90)||(46525813-46525902)
chr1 (41-88)||(14512669-14512716)
chr1 (30-90)||(2999489-2999549)
chr1 (40-88)||(3000223-3000271)
chr1 (33-86)||(46524542-46524595)
chr1 (30-88)||(14204837-14204895)
chr1 (30-88)||(50379972-50380030)
chr1 (32-93)||(43706901-43706962)
chr1 (32-88)||(2425471-2425527)
chr1 (238-314)||(6230075-6230151)
chr1 (32-88)||(28920899-28920955)
chr1 (32-88)||(46313276-46313332)
[»] chr8 (4 HSPs)
chr8 (40-88)||(13883878-13883926)
chr8 (32-88)||(38612219-38612275)
chr8 (32-88)||(38613419-38613475)
chr8 (30-88)||(13882655-13882713)
[»] scaffold1875 (1 HSPs)
scaffold1875 (32-88)||(756-812)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 33997867 - 33998180
Alignment:
Q  1 tcttagggggcaaaattttcannnnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagataatttgc 100  Q
    |||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33997867 tcttagggggcaaaattttcattttttttattagggggtcaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagataatttgc 33997966  T
Q  101 gaaagttttgggcaatgacagaaagagctataaagtgattatcaagcattctcttgagaaagagtgctgtgaataatgcaggttctgatttctgaaggca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33997967 gaaagttttgggcaatgacagaaagagctataaagtgattatcaagcattctcttgagaaagagtgctgtgaataatgcaggttctgatttctgaaggca 33998066  T
Q  201 acaacatatcatcacccttatgaacttgaaatcttttgtgttgaaggaacatagttatgggatccgtatggtataagtatggagcttggaaagagagaca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  33998067 acaacatatcatcacccttatgaacttgaaatcttttgtgttgaaggaacatagttatgggatccgtatggtataagtgtggagcttgaaaagagagaca 33998166  T
Q  301 ttggtccctacaag 314  Q
    ||||||||||||||    
T  33998167 ttggtccctacaag 33998180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 8747749 - 8747691
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  8747749 attagggggccaaaatcgcaacattggcaaacttaaggggtcaaaactgtagtttagcc 8747691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 8749046 - 8749104
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  8749046 attagggggccaaaatcgcaacattggcaaacttaaggggtcaaaagtgtagtttagcc 8749104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 8896953 - 8897011
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  8896953 attaggggaccaaaatcgtaacattggcaaacttagggagtcaaaactgtagtttagcc 8897011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 48157678 - 48157738
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    |||||||||||||||||||| | |||  ||| ||||||||||||||||| |||||||||||    
T  48157678 attagggggccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaa 48157738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 40168695 - 40168639
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||| ||||   ||| ||||||||||||||||| |||||||||    
T  40168695 tagggggccaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcc 40168639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 9397437 - 9397500
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagataa 95  Q
    ||||||||||||||| |||||||   ||||||||||||| |||| || ||||||||||| ||||    
T  9397437 tagggggccaaaatcccaacattttaaaacttagggggtgaaaagtgcagtttagccaaaataa 9397500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 40169781 - 40169836
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagc 87  Q
    |||||||||||||||||| ||||   ||| ||||||||||||||||| ||||||||    
T  40169781 tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagc 40169836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 1961172 - 1961228
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||| ||||| || ||||||||||||||| |||| || | |||||||    
T  1961172 tagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcactttagcc 1961228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 9178690 - 9178634
Alignment:
Q  33 agggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcca 89  Q
    ||||||||||||||||| | |||  ||| ||||| ||||||||||| ||||||||||    
T  9178690 agggggccaaaatcgcacctttatgaaagttaggaggtcaaaactgcagtttagcca 9178634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 25011791 - 25011731
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaaga 92  Q
    |||||||||||||||||||||||   |||||||||||   |||| || |||||||||||||    
T  25011791 tagggggccaaaatcgcaacattttgaaacttaggggacgaaaagtggagtttagccaaga 25011731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 31435854 - 31435909
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||| ||||||||||||||| |||||| ||  ||| ||||||||||||||||||    
T  31435854 tagggggtcaaaatcgcaacattggcaaacata-agggccaaaactgtagtttagcc 31435909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 55780443 - 55780387
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||||||||||||||||| | ||||||| ||||  |||| || |||||||||    
T  55780443 tagggggccaaaatcgcaacatttgaaaacttaaggggcgaaaaatgaagtttagcc 55780387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 55844623 - 55844567
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||||||||||||||||| | ||||||| ||||  |||| || |||||||||    
T  55844623 tagggggccaaaatcgcaacatttgaaaacttaaggggcgaaaaatgaagtttagcc 55844567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 27553778 - 27553867
Alignment:
Q  1 tcttagggggcaaaattttcannnnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    |||||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27553778 tcttagggggcaaaattttcattttttttattaggaggccaaaatcgcaacattagcaaacttagggggttaaaactgtagtttagccaa 27553867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27552539 - 27552452
Alignment:
Q  1 tcttagggggcaaaattttcannnnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||||| |||||||||        ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  27552539 tcttagggggctaaattttcattttttttattagggagccaaaatcgcaacattggcaaatttagggggtcaaaactgtagtttagcc 27552452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 12812894 - 12812836
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||    
T  12812894 attagggggccaaaatctcaacattagcaaacttaagaggtcaaaactgtagcttagcc 12812836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 28851674 - 28851732
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    ||||||| |||||||||||||||   ||| ||||||||||||||||| |||||||||||    
T  28851674 tagggggtcaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagccaa 28851732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 10851969 - 10851913
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||  ||||||||||||||   ||| |||||||||||||||||||||||||||    
T  10851969 tagggggttaaaatcgcaacattgataaagttagggggtcaaaactgtagtttagcc 10851913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 24192291 - 24192244
Alignment:
Q  41 aaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcca 89  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||    
T  24192291 aaaatcgcaacattagcaaactt-tggggccaaaactgtagtttagcca 24192244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 45413479 - 45413535
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||| ||||   ||| ||||||||||||||||| |||||||||    
T  45413479 tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 45413535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 1389289 - 1389231
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    |||||||||||||||||| ||||   ||| ||||||||| ||||||| |||||||||||    
T  1389289 tagggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagccaa 1389231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 45412391 - 45412335
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||| |||||||||| ||||   ||| ||||||||||||||||| |||||||||    
T  45412391 tagggggtcaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 45412335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 35080341 - 35080281
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35080341 attaggggaccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagccaa 35080281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 9805426 - 9805484
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9805426 attagagggccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcc 9805484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 35081601 - 35081659
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  35081601 attagggcgccaaaatcgcaacattgacaaacttagggggtcaaaactgtagtttagcc 35081659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 23621990 - 23622039
Alignment:
Q  39 ccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  23621990 ccaaaatcgcaacattggcaaacttaggaggccaaaactgtagtttagcc 23622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 12962040 - 12961984
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||| ||||   ||| ||||||||| ||||||| |||||||||    
T  12962040 tagggggccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 12961984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 22417716 - 22417656
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  22417716 attagggggccaaaatcgtaacattagcaaacttagggggtcaaaactgtagtttaaccaa 22417656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 22418908 - 22419000
Alignment:
Q  1 tcttagggggcaaaattttcannnnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagat 93  Q
    |||||||||||||||||||||        |||||||| | ||||||| ||||||  ||||||||||||| |||||| ||||||||||| ||||    
T  22418908 tcttagggggcaaaattttcattttttttattaggggacaaaaatcgtaacattgacaaacttagggggccaaaaccgtagtttagcctagat 22419000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 6978139 - 6978203
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagataat 96  Q
    ||||| |||||||||||| ||||   ||| ||||||||| ||||||| |||||||||||||||||    
T  6978139 tagggagccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagccaagataat 6978203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 20409123 - 20409067
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||| ||||   ||| ||||||||||||||||| |||||||||    
T  20409123 tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 20409067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 12181650 - 12181595
Alignment:
Q  33 agggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||| |||||||  |||| ||||| ||||||||||| |||||||||    
T  12181650 agggggccaaaatcccaacatttacaaagttaggaggtcaaaactgcagtttagcc 12181595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 10120223 - 10120173
Alignment:
Q  40 caaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    |||||||||||||||  ||||||||||||| ||||| ||| ||||||||||    
T  10120223 caaaatcgcaacattgacaaacttagggggccaaaattgttgtttagccaa 10120173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 15889027 - 15888990
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttaggggg 69  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  15889027 tagggggccaaaattgcaacatttgcaaacttaggggg 15888990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 20410219 - 20410275
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||| |||||||||| ||||   ||| ||||||||||||||||| |||||||||    
T  20410219 tagggggtcaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcc 20410275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 10584082 - 10584142
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  10584082 attagggggccaaaatcgcaacattggcaaacttaggggatcaaaactgtagtttagccaa 10584142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 32829798 - 32829738
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  32829798 attagggggccaaaatcgcaaaattggcaaacttagggggtcaaaactgtagtttagccaa 32829738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 26722589 - 26722531
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||    
T  26722589 tagggggccaaaatcgcaacattggtaaacttagggggccaaaactgtagtttagccaa 26722531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 26723906 - 26723962
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  26723906 tagggggccaaaattgcaacattagtaaacttagggggccaaaactgtagtttagcc 26723962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 51219520 - 51219460
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    |||||||||||||||| ||||||||  |||||||||| |||||||||||||||||||||||    
T  51219520 attagggggccaaaattgcaacattgacaaacttaggaggtcaaaactgtagtttagccaa 51219460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 51220602 - 51220660
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||    
T  51220602 attagggggctaaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcc 51220660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 32831090 - 32831148
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||| ||| |||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  32831090 attagagggtcaaaatcgcaacattgacaaacatagggggtcaaaactgtagtttagcc 32831148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 53157176 - 53157233
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  53157176 attagagggccagaatcgcaacattggcaaactta-ggggtcaaaactgtagtttagcc 53157233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 21326376 - 21326320
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||| ||||||| |||| ||| | ||||||| |||||||||| ||||||||||||    
T  21326376 taggggaccaaaattgcaatattggtaaacttaaggggtcaaaagtgtagtttagcc 21326320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 40630627 - 40630683
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||| ||||| || ||||||||||||||| |||| || | |||||||    
T  40630627 tagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcactttagcc 40630683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 54539500 - 54539556
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||| ||||  |||| ||| ||||| ||||||| |||||||||    
T  54539500 tagggggccaaaatcgcaccattgtcaaagttaaggggttaaaactgcagtttagcc 54539556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 124529 - 124587
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||    
T  124529 attagggggccaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagcc 124587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 3597376 - 3597323
Alignment:
Q  35 ggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  3597376 ggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 3597323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 5504136 - 5504196
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||    
T  5504136 attagggggtcaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagccaa 5504196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 3598924 - 3598982
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    ||||||||||||||||||||||| | ||| |||||||  ||||||||||||||||||||    
T  3598924 tagggggccaaaatcgcaacattggtaaatttaggggaccaaaactgtagtttagccaa 3598982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 5502975 - 5502918
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||| |||||||| |||||||||  ||||||||||||||||||||||    
T  5502975 attagggggccaaaattgcaacattggcaaactta-agggtcaaaactgtagtttagcc 5502918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 121407 - 121349
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||| |||||| |||||||| ||||| |||| | ||||||||||||||||||||    
T  121407 attagggggtcaaaattgcaacattggcaaatttagagtgtcaaaactgtagtttagcc 121349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 14189722 - 14189663
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcca 89  Q
    |||||||| ||||||||||| | |||  ||| ||||||||||||||||| ||||||||||    
T  14189722 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcca 14189663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 14190487 - 14190545
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||| ||||||||||| | |||  ||| ||||||||||||||||| |||||||||    
T  14190487 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 14190545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 17414600 - 17414542
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    |||||||||||||||||| ||||   ||| |||| |||||||||||| |||||||||||    
T  17414600 tagggggccaaaatcgcaccattgtaaaagttagagggtcaaaactgcagtttagccaa 17414542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 17415695 - 17415749
Alignment:
Q  36 gggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    |||||||||||||| ||||   ||| ||||||||||||||||| |||||||||||    
T  17415695 gggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagccaa 17415749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 8061912 - 8061856
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||| ||||   ||| ||||||||| ||||||| |||||||||    
T  8061912 tagggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagcc 8061856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 46312123 - 46312065
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  46312123 attagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 46312065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 46525813 - 46525902
Alignment:
Q  1 tcttagggggcaaaattttcannnnnnnnattagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    ||||||||||| |||||||||        |||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  46525813 tcttagggggccaaattttcattttttttattaggaggccaaaatcgcaacattggcaaacttagggggccaaaactgtagattagccaa 46525902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 14512669 - 14512716
Alignment:
Q  41 aaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  14512669 aaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 14512716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 2999549 - 2999489
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 90  Q
    ||||||||  |||||||||||||||  |||| |||| ||||||||||||||||||||||||    
T  2999549 attaggggatcaaaatcgcaacattgacaaagttagagggtcaaaactgtagtttagccaa 2999489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 3000223 - 3000271
Alignment:
Q  40 caaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||| |||| ||| |||||||||||||||||||||||    
T  3000223 caaaatcgcaacattaacaaaattaaggggtcaaaactgtagtttagcc 3000271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 46524595 - 46524542
Alignment:
Q  33 agggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttag 86  Q
    ||||| ||||||| |||||||| | |||||||||||| ||||||||||||||||    
T  46524595 aggggaccaaaattgcaacattggtaaacttagggggccaaaactgtagtttag 46524542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 14204895 - 14204837
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||| |||||||||||||| ||||  ||||| || |||| ||||||||||||||||||    
T  14204895 attagagggccaaaatcgcagcattgtcaaacataaggggccaaaactgtagtttagcc 14204837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 50379972 - 50380030
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||| ||||||||||| | |||  ||| ||||||||||||||||| |||||||||    
T  50379972 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 50380030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 43706901 - 43706962
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaagat 93  Q
    |||||||||||||||||||||||   ||| ||||||||  |||| || ||||||||||||||    
T  43706901 tagggggccaaaatcgcaacattttaaaaattagggggcaaaaagtggagtttagccaagat 43706962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 2425471 - 2425527
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||||||||||||||||||  |||| |||||||  |||| || |||||||||    
T  2425471 tagggggccaaaatcgcaacattatgaaacatagggggcaaaaagtgcagtttagcc 2425527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 6230075 - 6230151
Alignment:
Q  238 gtgttgaaggaacatagttatgggatccgtatggtataagtatggagcttggaaagagagacattggtccctacaag 314  Q
    |||||||||||||| |||| ||||| |||||||| ||  || ||||  |||||| ||| || |||||||||||||||    
T  6230075 gtgttgaaggaacagagttttgggacccgtatggcatctgtctggaatttggaaggagggatattggtccctacaag 6230151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 28920899 - 28920955
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||||||||   ||||||||||||  |||| || |||||||||    
T  28920899 tagggggccaaaatcgcaacattttgaaacttagggggcgaaaagtgaagtttagcc 28920955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 46313276 - 46313332
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||| | ||   ||| ||||||||||||||||| |||||||||    
T  46313276 tagggggccaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcc 46313332  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 13883878 - 13883926
Alignment:
Q  40 caaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||    
T  13883878 caaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcc 13883926  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 38612275 - 38612219
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||||||||   ||| ||||||||||||||||| |||||||||    
T  38612275 tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 38612219  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 38613419 - 38613475
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||||||||   ||| ||||||||||||||||| |||||||||    
T  38613419 tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 38613475  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 13882713 - 13882655
Alignment:
Q  30 attagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    ||||||||| ||||||  ||||||| ||||||||||| | |||||| ||||||||||||    
T  13882713 attagggggtcaaaattacaacattggcaaacttaggagatcaaaattgtagtttagcc 13882655  T

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Target: scaffold1875 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 812 - 756
Alignment:
Q  32 tagggggccaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 88  Q
    |||||||||||||||||||||||   ||||||| ||||| |||| || |||||||||    
T  812 tagggggccaaaatcgcaacatttcgaaacttaaggggtgaaaagtgcagtttagcc 756  T

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