View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_21 (Length: 324)
Name: NF10501_low_21
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 34443117 - 34442819
Alignment:
| Q |
16 |
ctattaacccatattcttctccaaaaaatccgccacaaaagacctcatgtactcctcaccgtatgggagtaatccccatcacatcatggccgttagatca |
115 |
Q |
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| T |
34443117 |
ctattaacccatattcttctccaagaaatccgccacaaaagacctcatgtactcctcaccgtatgggagtaatccccatcacatcatggccgttagatca |
34443018 |
T |
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| Q |
116 |
atctgaaatgacttctcgcactttacgtagagtttttaggggaaggttacaacgtctccaactataaaagtgtgactcattatcacgctcaaggtataat |
215 |
Q |
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| T |
34443017 |
atctgaaatgacttctcgcactttacgtagagtttctaggggaaggttacaacgtctccaactataaaagtgtgactcattgtcacgctcaaggtataat |
34442918 |
T |
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| Q |
216 |
cacaattcaccatattttcacactcatttcttatctttgtatgacgttgacttgagcgtcggaatgctaacctattttgcaagtttctttgccttcatc |
314 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34442917 |
cacaattcaccatattttcacacccatttcttatctttctatgacgttgacttgagcgtcggaatgctaacctattttgcaagtttctttcccttcatc |
34442819 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 30685856 - 30685787
Alignment:
| Q |
122 |
aatgacttctcgcactttacgtagagtttttaggggaaggttacaacgtctccaactataaaagtgtgac |
191 |
Q |
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| T |
30685856 |
aatggcttatcgcactttgcgttgggtttttaggagaaggttacaacgtcttcaattataaaagtgtgac |
30685787 |
T |
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