View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10501_low_24 (Length: 318)
Name: NF10501_low_24
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 34715564 - 34715274
Alignment:
| Q |
1 |
catatatattttgcttctttcttgtcttcgccaacatgtacaagtgcttcagtttgaaaaagataatgaagtttaagttcatgttctaaggttgattttc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34715564 |
catatatatattgcttctttcttgtcttcgccaacatgtacaagtgcttcagtttgaaaaagataatgaagtttaagttcatgttctaaggttgattttc |
34715465 |
T |
|
| Q |
101 |
atannnnnnngaagttaacagaaagctaaggtaagaagcaagcaagaaaaaaccctagcaaatctcctagagaaacacttgcaaaggtattttgtcttgc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34715464 |
atatttttt-gaagttaacagaaagctaaggtaagaagcaagcaagaaaaaaccctagcaaatctcctagagaaacacttgcaaaggtattttgtcttgc |
34715366 |
T |
|
| Q |
201 |
tgtaaatcttttgataataggataaaataaatattctagattgattttcatctatatgttcaattccttttcaatttaatcctttctcaatg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34715365 |
tgtaaatcttttgataataggataaaataaatattctagattgatttccatctatatgttcaattccttttcaatttaatcctttctcaatg |
34715274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University