View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_29 (Length: 301)
Name: NF10501_low_29
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_29 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 40894130 - 40894412
Alignment:
| Q |
6 |
attctttacggttgttagaggtttttcaaaatctttacggtcttctttacatttgatttggttatggtgcgtttggctaatttggaaggaaatgaagagt |
105 |
Q |
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| T |
40894130 |
attctttacgattgttagaggtttttcaaaatctttacggtcttctttacatttgatttggttatggtgcgtttggctaatttggaaggaaatgaagagt |
40894229 |
T |
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| Q |
106 |
tgtatttttcaacataaggaggaatcattgcaaaacttgttaagacaaagttaaactttctctttttgcggttgaaaaggaagaatgttacttttacttt |
205 |
Q |
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| T |
40894230 |
tgtatttttcaacataaggaggaatcattgcaaaacttgttaagacaaagttaaactttctctttttatggttgaaaaggaagaatgttacttttacttt |
40894329 |
T |
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| Q |
206 |
tgattttcataattggtggcttaaccccctaacgtgcttgggatttctcaattaatattttagttttgttacttctgttttgt |
288 |
Q |
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| T |
40894330 |
tgattttcataattggtggcttaaccccctaacgggcttggggtttctcacttaatattttagttttgttacttctcttttgt |
40894412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 37072931 - 37072859
Alignment:
| Q |
49 |
tctttacatttgatttggttatggtgcgtttggctaatttggaaggaaatgaagagttgtatttttcaacataa |
122 |
Q |
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| T |
37072931 |
tctttacatttgatttgattatg-tgtttttgggtaatttggaaagaaatgagcaactgtatttttcaacataa |
37072859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 45 - 288
Target Start/End: Original strand, 31034133 - 31034378
Alignment:
| Q |
45 |
gtcttctttacatttgatttggttatggtgcgtttggctaatttggaaggaaatgaagagttgtatttttcaa-cataaggaggaatcattgcaaaactt |
143 |
Q |
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| T |
31034133 |
gtcttctttacatttgatttggtaatcgtgcatttaggtgattcagaaggaaaggaatagccacatttttccagcataaggaggaatcgttgtagcactt |
31034232 |
T |
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| Q |
144 |
gttaagacaaagttaaactttc-tctttttgc-ggttgaaaaggaagaatgttacttttacttttgattttcataattggtggcttaaccccctaacgtg |
241 |
Q |
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| T |
31034233 |
gttg-gataaaattaaacttaaatctttttggtggttgaaagcgaagaatattacttttgtttttgattttcataattggtggcttgaccccctaatgta |
31034331 |
T |
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| Q |
242 |
cttgggatttctcaattaatattttagttttgttacttctgttttgt |
288 |
Q |
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| T |
31034332 |
cttgggttttctcacttagcttttttgttttgttgtttctgtgttgt |
31034378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 255
Target Start/End: Complemental strand, 7908 - 7709
Alignment:
| Q |
57 |
tttgatttggttatggtgcgtttggctaatttggaaggaaatgaagagttgtatttttcaacataaggaggaatcattgcaaaacttgttaagacaaagt |
156 |
Q |
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| T |
7908 |
tttgttttggttatcgtccatttgagtaatttgaaaagaactgaagagtcgtatttttcaacataaggataaatcgttgcagcatttgttt-gacaaatt |
7810 |
T |
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| Q |
157 |
taaactt---tctctttttgcggttgaaaaggaagaatgttacttttacttttgattttcataattggtggcttaaccccctaacgtgcttgggatttct |
253 |
Q |
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| T |
7809 |
taaaccgcaatc-cttttggtggttgaaaacagagaatgttactcttgttttttattttcataattggtggcttaacccctcaatgtgtttggggtttct |
7711 |
T |
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