View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_30 (Length: 297)
Name: NF10501_low_30
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 46627362 - 46627642
Alignment:
| Q |
1 |
tgcccccacttgggttacaagttgaagttacccaactcggcaagctggcagccttgtcagaaggttatatagacttatttctttcatgaaatactcgatg |
100 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
46627362 |
tgcccccacttgagttacaagttgaagttacccagctcggcaagctggcagccttgtcagaagattatatagaattatttctttcatgaaatactcgatg |
46627461 |
T |
|
| Q |
101 |
tgggacttctaaatgttaactaaaacttcttccccttccaccatgttcaactttcattgctggcctaagcttttgaattaagatgctatgctaattttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46627462 |
tgggacttctaaatgttaactaaaacttcttccccttccaccatgttcaactttcattgctggcctaagcttttgaattaagatgctatgctaattttat |
46627561 |
T |
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| Q |
201 |
tgctgtaggcttcattgtgtttatgcctgtgaactctccctttaagactgtcctaactcccacacacatatatgttagagg |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46627562 |
tgctgtaggcttcattgtgtttatgcctgtgaactctccctttaagactgtcctaactcccacacacatatatgttagagg |
46627642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 46621629 - 46621849
Alignment:
| Q |
1 |
tgcccccacttgggttacaagttgaagttacccaactcggcaagctggcagccttgtcagaaggttatatagacttatttctttcatgaaatactcgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
46621629 |
tgcccccacttgggttacaagttgaagttacccaactcggcaagctggcagccttgccagaagtttatatagacttatttctatcatgaaattctcgatg |
46621728 |
T |
|
| Q |
101 |
tgggacttctaaatgttaactaaaacttcttccccttccacca-------tgttcaactttcattgctggcctaagcttttgaattaagatgctatgcta |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46621729 |
tgggacttctaaatgttaactaaaacttcttccccttccaccatgttcattgttcaactttcattgctcacctaagcttttgaattaagatgctatgcta |
46621828 |
T |
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| Q |
194 |
attttattgctgtaggcttca |
214 |
Q |
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||||||||| |||||| |||| |
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| T |
46621829 |
attttattgatgtaggtttca |
46621849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 46429051 - 46428924
Alignment:
| Q |
1 |
tgcccccacttgggttacaagttgaagttacccaactcggcaagctggcagccttgtcagaaggttatatagacttatttctttcatgaaatactcgatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
46429051 |
tgcccccagttgggttacaagttggggttacccaactcagcaagttgacagccttgtcagaaggttataaagacttatttctttcatgaaatacacgatg |
46428952 |
T |
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| Q |
101 |
tgggacttctaaatgttaactaaaactt |
128 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
46428951 |
tgggacttctaaaagttaactaaaactt |
46428924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 37147509 - 37147237
Alignment:
| Q |
1 |
tgcccccacttgggttacaagttgaagttacccaactcggcaagctggcagccttgtcagaaggttatatagacttatttctttcatgaaatactcgatg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||| ||| ||||| ||||| ||||||| ||||||||| ||||| |
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| T |
37147509 |
tgcccccacttgggttacaagttgatgttatccaactcggcaagctgatagccttgtcataagattataaagactagtttcttttatgaaatacacgatg |
37147410 |
T |
|
| Q |
101 |
tgggacttctaaatgttaactaaaacttcttccccttccaccatgttcaactttcattgctggcctaagcttttgaatta------agatgctatgctaa |
194 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| | || |||||| | |
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| T |
37147409 |
tgggacttataaatgtaaactaaaacttcttccccttccattatgttc-actttcattgctggcttaagcttttgaattaaatgttatattatatgctta |
37147311 |
T |
|
| Q |
195 |
ttttattgctgt--------aggcttcattgtgtttatgcctgtgaactctccctttaagactgtcctaactcc |
260 |
Q |
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|||||||||||| |||||||||| |||||| || | ||| |||||| |||||||||||||||||||| |
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| T |
37147310 |
ttttattgctgtaggtttcaaggcttcattatgtttaagcgtttgagctctccttttaagactgtcctaactcc |
37147237 |
T |
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