View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_31 (Length: 297)
Name: NF10501_low_31
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 15847310 - 15847480
Alignment:
| Q |
13 |
gagaatatattgtgagttatacaattagaatttatagcacttaccggaaaatctaagcgagggaacacataaacctaatgattaaggttttggattaaga |
112 |
Q |
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| T |
15847310 |
gagaatatattgtgagttatacaattagaatttatagcacttactggaaaatctaagcgagggaacacataaacctaatgattaaggttttggattaaga |
15847409 |
T |
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| Q |
113 |
tatgatgtcaactcacttgtataattgtttaaagtcaaatgtgatgatttccaaaccccttcatgacccaa |
183 |
Q |
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| T |
15847410 |
tatgatgtcaactcacttgtataattatttaaagtcaaatgtgatgattcccaaaccccttcatgacccaa |
15847480 |
T |
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Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 15847525 - 15847619
Alignment:
| Q |
185 |
gacaatgcaagtggatatggatgaaaaaacttatgctcgagagaaattaatgtgtgtagcaaacgtgaggtagaagtttcacattaaatgaagaagt |
281 |
Q |
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| T |
15847525 |
gacaatgcaagtggatatggatgaaaaaacttctcctcgagagagattaatgtg--tagcaaacgtgaggtagaagtttcacattaaatgaagaagt |
15847619 |
T |
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