View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_33 (Length: 288)
Name: NF10501_low_33
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 23830953 - 23830684
Alignment:
| Q |
1 |
gacgaaggaaggtgagtatggtgattcatgcatgacattcattgtatgacatgttgtgggaactggtttaactgtaatggacccccttttgttttgtttt |
100 |
Q |
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| T |
23830953 |
gacgaaggaaggtgagtatggtgattcatgcatgacattcattgtatgacatgttgtgggaactggtttaactgtaatggacccccttttgttttgtttt |
23830854 |
T |
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| Q |
101 |
gattggacaaaatccttaatannnnnnngcaaagttttctagtccattagattttactgttaacatccctacatttggtttcagatagcttctcgtacta |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23830853 |
gattggacaaaatccttaatatttttttgcaaagttttctagtccattagattttactgttaacatcccgacatttggtttcagatagcttctcgtacta |
23830754 |
T |
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| Q |
201 |
taagttggctctagcaagtggtaagcttccatgacttgtaagcaagtggagcataattgaaccttttttg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23830753 |
taagttggctctagcaagtggtaagcttccatgacttgtaagcaagtggagcataattgaaccttttttg |
23830684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 23826874 - 23826842
Alignment:
| Q |
2 |
acgaaggaaggtgagtatggtgattcatgcatg |
34 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
23826874 |
acgaaggaaagtgagtatggtgattcatgcatg |
23826842 |
T |
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