View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10501_low_36 (Length: 278)
Name: NF10501_low_36
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 51679605 - 51679354
Alignment:
| Q |
11 |
ttggaggccttgaccctatttgaagtttctctgctaacattgatccattctcttccatgccattctgcacatgcataaatatatattgagatatggagct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51679605 |
ttggaggccttgaccctatttgaagtttctctgctaacattgatccattctcttccatgccattctgcacatgcataaatatatattgagatatggagct |
51679506 |
T |
|
| Q |
111 |
atagagatatnnnnnnntatatatgatttatgaatttgatattgtaatacctttgcaacttcattgagattggaaattggtcttcctgcatacataataa |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51679505 |
atagagatataaaaaaatatatatgatttatgaatttgatattgtaatacctttgcaacttcgttgagattggaaattggtcttcctgcatacataataa |
51679406 |
T |
|
| Q |
211 |
ttttatagacatggttaaaaataagaatattacaagttggaatattgaatat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51679405 |
ttttatagacatggttaaaaataagaatattacaagttggaatattgaatat |
51679354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University