View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_38 (Length: 267)
Name: NF10501_low_38
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 11551422 - 11551680
Alignment:
| Q |
1 |
tacaaaataatgcagttaccatttttctttgattcattcctatctatcatatagagaggatgnnnnnnngagtaaaacttgtgcagaacctgtcaattgt |
100 |
Q |
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| T |
11551422 |
tacaaaataatgcagttaccatttttctttgattcattcctatctatcatatagagaggatgaaaaaaagagtaaaacttgtgcagaacctgtcaattgt |
11551521 |
T |
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| Q |
101 |
aaaggcttttcttcccgcaccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcct |
200 |
Q |
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| T |
11551522 |
caaggcttttcttcccgcaccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcct |
11551621 |
T |
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| Q |
201 |
gagccacaagataaattttgtgtgaatgtcgatttgctttgtggtttccgttctctgct |
259 |
Q |
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| T |
11551622 |
gagccacaagataaattttgtgtgaatgtcgatttcctttgtggtttccgttctctgct |
11551680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 11546567 - 11546820
Alignment:
| Q |
1 |
tacaaaataatgcagttaccatttttctttgattcattcctat-----ctatcatatagagaggatgnnnnnnngagtaaaacttgtgcagaacctgtca |
95 |
Q |
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| T |
11546567 |
tacaaaataatgcagttaccatttttctttgattcattcatatgatatctatcatatagagtggatgaaaaaaagagtaaaacttgtgcagaacctgtca |
11546666 |
T |
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| Q |
96 |
attgtaaaggcttttcttcccgcaccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaat |
195 |
Q |
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| T |
11546667 |
t-------ggtttttcttcccacaccagcctctcttctttgtctcataaatttcaatttgaatgtccaaagtatgtagctcttcacagttccccaacaa- |
11546758 |
T |
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| Q |
196 |
tgcctgagccacaagataaattttgtgtgaatgtcgatttgctttgtggtttccgttctctgct |
259 |
Q |
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| T |
11546759 |
--cctgagccacaagagatgttttgtgtgaatgtcaatttgttttgtggtttccgttctctgct |
11546820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 11561957 - 11561830
Alignment:
| Q |
126 |
tctcttctttgtctcataactttca-atttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaattttgtgtg |
224 |
Q |
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| T |
11561957 |
tctcttctttgtctcatagatttcatatttgaaagttcaaattatgtagctcttcacagttccacatcaattgtc-------caagagaaattttgtgtg |
11561865 |
T |
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| Q |
225 |
aatgtcgatttgctttgtggtttccgttctctgct |
259 |
Q |
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| T |
11561864 |
aatgtcaatttgttttgtggttttcattctctgct |
11561830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11562059 - 11561998
Alignment:
| Q |
1 |
tacaaaataatgcagttaccatttttctttgattcattcctatctatcatatagagaggatg |
62 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
11562059 |
tacaaaataatgaagttaccatttttctttgattcattcatatcaatcatatagagtggatg |
11561998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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