View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_4 (Length: 439)
Name: NF10501_low_4
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 50969080 - 50969426
Alignment:
| Q |
19 |
gtttcgcgcttaatttataccgacgcagtagcgaatcaaatctccaagctaagctttttatcttctccgtcgaaagctctatcaaaaggcgttgtttctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50969080 |
gtttcgcgcttaatttataccgacgcagtagcgaatcaaatctccaagctaagctttttatcttctccgtcgaaagctctatcaaaaggcgttgtttctg |
50969179 |
T |
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| Q |
119 |
tccaaagccgttgagaatcggttaagcttctgggagagatcgtgtgcggtgatccacaggtgagttcgcgtgcaccttctccttttagatcaagcgtttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50969180 |
tccaaagccgttgagaatcggttaagcttctgggagagatcgtgtgcggtgatccacaggtgagttcgcgtgcaccttctccttttagatcaagcgtttt |
50969279 |
T |
|
| Q |
219 |
ctcttcttatacataattcgatgaacgtttccgtgttgatcggaaatttgttctcagataaatctcgagannnnnnngataaatattattaagctctcac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50969280 |
ctcttcttatacataattcgatgaacgtttccgtgttgatcggaaatttgttctcagataaatctcgagatttttttgataaatattattaagctctcac |
50969379 |
T |
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| Q |
319 |
tgtactgtttatggtgtgtccacttcagcttttactttgcattttcc |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50969380 |
tgtactgtttatggtgtgtccacttcagcttttactttgcattttcc |
50969426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 51072216 - 51072562
Alignment:
| Q |
19 |
gtttcgcgcttaatttataccgacgcagtagcgaatcaaatctccaagctaagctttttatcttctccgtcgaaagctctatcaaaaggcgttgtttctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51072216 |
gtttcgcgcttaatttataccgacgcagtagcgaatcaaatctccaagctaagctttttatcttctccgtcgaaagctctatcaaaaggcgttgtttctg |
51072315 |
T |
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| Q |
119 |
tccaaagccgttgagaatcggttaagcttctgggagagatcgtgtgcggtgatccacaggtgagttcgcgtgcaccttctccttttagatcaagcgtttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51072316 |
tccaaagccgttgagaatcggttaagcttctgggagagatcgtgtgcggtgatccacaggtgagttcgcgtgcaccttctccttttagatcaagcgtttt |
51072415 |
T |
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| Q |
219 |
ctcttcttatacataattcgatgaacgtttccgtgttgatcggaaatttgttctcagataaatctcgagannnnnnngataaatattattaagctctcac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51072416 |
ctcttcttatacataattcgatgaacgtttccgtgttgatcggaaatttgttctcagataaatctcgagatttttttgataaatattattaagctctcac |
51072515 |
T |
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| Q |
319 |
tgtactgtttatggtgtgtccacttcagcttttactttgcattttcc |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51072516 |
tgtactgtttatggtgtgtccacttcagcttttactttgcattttcc |
51072562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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