View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_40 (Length: 263)
Name: NF10501_low_40
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 1029833 - 1029582
Alignment:
| Q |
1 |
agtttgcatgtgtatgtctctgtgatactagaaatttcaataccttgtatcatggaactgtcaatttagttcacattccaaaggagcagaatatatatgt |
100 |
Q |
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| T |
1029833 |
agtttgcatgtgtatgtctctgtgatactagaaatttcaataccttgtatcatgggactgtcaatttagttcacattccaaaggagcagaatatatatgt |
1029734 |
T |
|
| Q |
101 |
tgattttttgttgacaacatctcattcgcagttcgcactgaatatttcattttgggtttataatgttacagtgttttgtttcagaacattactcctatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029733 |
tgattttttgttgacaacatctcattcgcagttcgcactgaatatttcattttgggtttataatgttacagtgttttgtttcagaacattactcctatac |
1029634 |
T |
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| Q |
201 |
taatctattcttgtataatacctttgttcaagtttaacttacgtggattcat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029633 |
taatctattcttgtataatacctttgttcaagtttaacttacgtggattcat |
1029582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 21237333 - 21237440
Alignment:
| Q |
1 |
agtttgcatgtgtatgtctctgtgatactagaaatttca-ataccttgtatcatggaactgtcaatttagttcacattccaaaggagcagaatatatatg |
99 |
Q |
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|||||||||||||||||||||||| | |||||||| ||| || |||| | ||||| ||| |||| |||||||||||||||| | |||| ||||||| || |
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| T |
21237333 |
agtttgcatgtgtatgtctctgtgttgctagaaatctcagatgtcttgaaccatgggactatcaacttagttcacattccaaggtagcataatatatgtg |
21237432 |
T |
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| Q |
100 |
ttgatttt |
107 |
Q |
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||| |||| |
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| T |
21237433 |
ttggtttt |
21237440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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