View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10501_low_42 (Length: 254)

Name: NF10501_low_42
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10501_low_42
NF10501_low_42
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-243)||(58370-58612)
[»] chr6 (58 HSPs)
chr6 (6-243)||(28180976-28181213)
chr6 (6-243)||(28185228-28185465)
chr6 (4-243)||(28234424-28234663)
chr6 (3-243)||(28242663-28242903)
chr6 (1-241)||(28325338-28325578)
chr6 (9-243)||(28226815-28227049)
chr6 (1-243)||(28297801-28298043)
chr6 (1-243)||(28514030-28514272)
chr6 (8-241)||(26342024-26342257)
chr6 (61-241)||(27593110-27593290)
chr6 (6-241)||(27724935-27725170)
chr6 (6-243)||(26884025-26884262)
chr6 (9-241)||(27611092-27611324)
chr6 (6-241)||(27718469-27718704)
chr6 (48-241)||(28139445-28139638)
chr6 (6-238)||(26802304-26802536)
chr6 (6-229)||(28786140-28786363)
chr6 (6-229)||(28792261-28792484)
chr6 (61-243)||(27678863-27679045)
chr6 (6-243)||(27229094-27229331)
chr6 (62-243)||(27698582-27698763)
chr6 (8-240)||(28098460-28098692)
chr6 (8-239)||(26893563-26893794)
chr6 (61-243)||(27677702-27677884)
chr6 (6-232)||(28781001-28781227)
chr6 (18-243)||(26622850-26623075)
chr6 (18-243)||(26728828-26729053)
chr6 (61-238)||(31284205-31284382)
chr6 (6-241)||(27604795-27605030)
chr6 (61-239)||(26646396-26646574)
chr6 (61-239)||(26752364-26752542)
chr6 (122-243)||(28149916-28150036)
chr6 (66-241)||(29825949-29826124)
chr6 (61-243)||(27706490-27706672)
chr6 (62-243)||(27338153-27338334)
chr6 (62-243)||(27398893-27399074)
chr6 (107-243)||(25579682-25579818)
chr6 (107-243)||(25481705-25481841)
chr6 (107-243)||(26142828-26142964)
chr6 (63-243)||(27531285-27531465)
chr6 (9-243)||(26936959-26937193)
chr6 (6-243)||(26861478-26861715)
chr6 (88-169)||(26811453-26811534)
chr6 (87-163)||(27214360-27214436)
chr6 (87-163)||(27234792-27234868)
chr6 (159-243)||(25538555-25538639)
chr6 (87-243)||(26655932-26656088)
chr6 (87-243)||(26761903-26762059)
chr6 (62-94)||(28149593-28149625)
chr6 (87-169)||(26617269-26617351)
chr6 (87-169)||(26723197-26723279)
chr6 (26-188)||(28491663-28491825)
chr6 (26-188)||(29804073-29804235)
chr6 (126-243)||(26055908-26056025)
chr6 (126-243)||(26075878-26075995)
chr6 (159-243)||(2184303-2184387)
chr6 (183-243)||(26823879-26823939)
chr6 (107-175)||(26949624-26949692)
[»] scaffold0038 (4 HSPs)
scaffold0038 (4-243)||(34585-34824)
scaffold0038 (3-243)||(42825-43065)
scaffold0038 (1-241)||(116653-116893)
scaffold0038 (9-243)||(27313-27547)
[»] chr2 (2 HSPs)
chr2 (11-239)||(3279555-3279783)
chr2 (66-169)||(17993846-17993949)
[»] chr4 (6 HSPs)
chr4 (6-241)||(5091044-5091279)
chr4 (6-243)||(18731579-18731816)
chr4 (6-243)||(18655552-18655789)
chr4 (6-243)||(18724160-18724397)
chr4 (6-243)||(18699475-18699712)
chr4 (8-243)||(18679642-18679877)
[»] scaffold0349 (2 HSPs)
scaffold0349 (6-243)||(3509-3747)
scaffold0349 (62-232)||(14454-14624)
[»] chr8 (2 HSPs)
chr8 (21-203)||(31903728-31903910)
chr8 (6-243)||(29273858-29274095)
[»] scaffold1254 (1 HSPs)
scaffold1254 (6-229)||(19-242)
[»] scaffold0419 (1 HSPs)
scaffold0419 (6-229)||(7387-7610)
[»] scaffold0277 (2 HSPs)
scaffold0277 (6-229)||(13734-13957)
scaffold0277 (6-241)||(4761-4996)
[»] chr1 (1 HSPs)
chr1 (88-243)||(268432-268587)
[»] chr5 (1 HSPs)
chr5 (62-203)||(16688929-16689070)


Alignment Details
Target: scaffold0019 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 58612 - 58370
Alignment:
Q  1 cttcctcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagc 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  58612 cttcctcctcttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagc 58513  T
Q  101 tcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctagg 200  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  58512 tctttgtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctagg 58413  T
Q  201 attttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  58412 attttcattcccgtcttgtctatcaactatgcttcttcttcat 58370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 28180976 - 28181213
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||||| | |||||||||     
T  28180976 tcctcttccttctcctatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggttttactggaaatctcaatagagctcttt 28181075  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28181076 gtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggatttt 28181175  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  28181176 cattcccgtcttgtctatcaattatgcttcttcttcat 28181213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 28185228 - 28185465
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||| | |||||||||     
T  28185228 tcctcttccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgttttactggaaatctcaatagagctcttt 28185327  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28185328 gtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggatttt 28185427  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  28185428 cattcccgtcttgtctatcaattatgcttcttcttcat 28185465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 28234424 - 28234663
Alignment:
Q  4 cctcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctct 103  Q
    |||| ||||| |||||||||| |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  28234424 cctcttcttctttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctct 28234523  T
Q  104 tcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatt 203  Q
    | || |||||||||||| |||||||||||||||||| ||||||||||||||  | |||||||||||||||||||||||||||||| ||||||||||||||    
T  28234524 ttgtcacaagggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggatt 28234623  T
Q  204 ttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  28234624 ttcattcctgtcttgtctatcaattatgcttcttcttcat 28234663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 28242663 - 28242903
Alignment:
Q  3 tcctcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctc 102  Q
    |||||||||||| |||||||||  || |||||| | || |||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||| || ||    
T  28242663 tcctcctcttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatc 28242762  T
Q  103 ttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggat 202  Q
    || || | |||||||| ||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  28242763 tttgtaagaagggaattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggat 28242862  T
Q  203 tttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  28242863 tttcattcctgtcttgtctatcaattatgcttcttcttcat 28242903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 28325338 - 28325578
Alignment:
Q  1 cttcctcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagc 100  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||| ||     
T  28325338 cttcctcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaaga 28325437  T
Q  101 tcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctagg 200  Q
    |||| ||   ||| |||| || |||||||||||||||| ||| |||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  28325438 tctttgtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctagg 28325537  T
Q  201 attttcattcccgtcttgtctatcaactatgcttcttcttc 241  Q
    |||||||||||  | ||||||||||| ||||||||||||||    
T  28325538 attttcattcctattttgtctatcaattatgcttcttcttc 28325578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 28226815 - 28227049
Alignment:
Q  9 tcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtg 108  Q
    ||||||||||| |||| |||||||||| ||||||||||||| |||||||||  ||||||||| ||||||||||||| |||||||||||| | |||| ||     
T  28226815 tcttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgta 28226914  T
Q  109 acaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcat 208  Q
    | |||||||| | ||| ||| ||||||| |||||||||||||||||| | ||||||||| ||||||||||||||| |||| |||| ||||||||||||||    
T  28226915 agaagggaattcacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcat 28227014  T
Q  209 tcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||| |||||||||||||| ||||||||||||||||    
T  28227015 tcctgtcttgtctatcaattatgcttcttcttcat 28227049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 28298043 - 28297801
Alignment:
Q  1 cttcctcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagc 100  Q
    |||||||||||||||||||||||| ||||||  || |||| ||||| || ||||||||| ||||||| |||||  |||||| || ||||||| ||| ||     
T  28298043 cttcctcctcttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgctacagttttattggaaatctccacaaaga 28297944  T
Q  101 tcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctagg 200  Q
    |||| ||   |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  |||| ||||| |||||    
T  28297943 tctttgtaggaagggaattcgcaccttcattgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactagg 28297844  T
Q  201 attttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||||||||||| ||||| |||| ||| ||||||||||||||||    
T  28297843 attttcattcctgtcttatctaccaattatgcttcttcttcat 28297801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 28514030 - 28514272
Alignment:
Q  1 cttcctcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagc 100  Q
    |||||||||||||||||||||||| ||||||  || |||| ||||| || ||||||||| ||||||| |||||  |||||| || ||||||| ||| ||     
T  28514030 cttcctcctcttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgctacagttttattggaaatctccacaaaga 28514129  T
Q  101 tcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctagg 200  Q
    |||| ||   |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  |||| ||||| |||||    
T  28514130 tctttgtaggaagggaattcgcaccttcattgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactagg 28514229  T
Q  201 attttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||||||||||| ||||| |||| ||| ||||||||||||||||    
T  28514230 attttcattcctgtcttatctaccaattatgcttcttcttcat 28514272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 26342257 - 26342024
Alignment:
Q  8 ctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgt 107  Q
    |||||| ||||| |||| |||||| ||| | |||||||| |  ||||| ||   || ||||||||||||||||||||  ||| |||| ||||||||  ||    
T  26342257 ctcttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttactggcaatatctatagagctctatgt 26342158  T
Q  108 gacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttca 207  Q
    |||   ||| ||||||||||||||||||| || |||||||| |||||| || |||| |||| ||||||| |||| |||||| ||||||| ||||||||||    
T  26342157 gacggtggagtccgcaccttcattgatgatagggagcttcatggaggtgacaaaatcacacaatcacttgtcaaagccattgaagagtccaggattttca 26342058  T
Q  208 ttcccgtcttgtctatcaactatgcttcttcttc 241  Q
    ||||  | || || ||||||||||||||||||||    
T  26342057 ttccaattttctcaatcaactatgcttcttcttc 26342024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 27593290 - 27593110
Alignment:
Q  61 gtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacga 160  Q
    |||||||||| || ||||| || |  ||||||||||  ||||||  |||||||||||||  |||||||||||||||||  |  |||||| |||| || ||    
T  27593290 gtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaagaggaaatga 27593191  T
Q  161 aataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttc 241  Q
    ||| |||||||||||| ||||||||||| |||||||||||||||| ||||| || || |||||||||||||| ||||||||    
T  27593190 aatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttc 27593110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 27725170 - 27724935
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||| |||||| || || ||||||||||| ||||| ||   |||||||||  | |||||||| | |||||||||||  ||||||     
T  27725170 tcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctctta 27725071  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     ||||||||||||||  ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||| | || |||||||||||    
T  27725070 ctgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttt 27724971  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttc 241  Q
     ||||| || || |||||||||||||| | ||||||    
T  27724970 tattcctgtgttttctatcaactatgcctattcttc 27724935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 26884025 - 26884262
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||| |||||| || || |||||||| || || |||||  |||||||||| |||||||| |||| |||||||||||  ||||||     
T  26884025 tcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctctta 26884124  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     | |||||||||||| ||||||||||||||| |   | |||| | |||| | |||||| |||||||||||  ||||||||||| |||| ||||| |||||    
T  26884125 ctaacaagggaatccacaccttcattgatgataatcatcttccaagaggaagcgaaatcacaccatcactcatcaaggccattgaagaatctagaatttt 26884224  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
     |||||  | || |||| ||||||||| ||||||||||    
T  26884225 tattccaatattttctaccaactatgcatcttcttcat 26884262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 27611324 - 27611092
Alignment:
Q  9 tcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtg 108  Q
    ||||| || ||||||| |||||| || || |||||||| || ||||| ||   |||||||||| | |||||||| | |||||||||||  ||||||  ||    
T  27611324 tcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactg 27611225  T
Q  109 acaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcat 208  Q
    ||||||||||||  ||||||||||||||||  || |||| | ||||  | ||||| |||||||||||  ||||||||||| | || ||||||||||| ||    
T  27611224 acaagggaatccataccttcattgatgacaatgatcttccaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttat 27611125  T
Q  209 tcccgtcttgtctatcaactatgcttcttcttc 241  Q
    ||| || || |||||||||||||| ||||||||    
T  27611124 tcctgtgttttctatcaactatgcctcttcttc 27611092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 27718704 - 27718469
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| |||||| ||| |||||| || || |||||||| || ||||| ||   |||||||||  |  ||||||| | |||||||||||  ||||||     
T  27718704 tcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctctta 27718605  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     ||||||||||||||  ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||| | || |||||||||||    
T  27718604 ctgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttt 27718505  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttc 241  Q
     ||||| || || |||||||||||||| ||||||||    
T  27718504 tattcctgtgttttctatcaactatgcctcttcttc 27718469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 28139445 - 28139638
Alignment:
Q  48 agctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttc 147  Q
    ||||| |||||  |||||||||| |  ||||| |||| ||||||||||| |||||||||||||   ||||||| ||| || |||||||| || |||||||    
T  28139445 agcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttc 28139544  T
Q  148 aaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttc 241  Q
    |||||||| |||||||| |||| |||||  | || |||||| |||| |||||||||||||| || || || || ||||||||||| ||||||||    
T  28139545 aaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttcttc 28139638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 26802304 - 26802536
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || || |||| |||||| || || |||||||| || ||||| ||   ||||||||| || |||||||| |  ||||||||||  ||||||     
T  26802304 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 26802403  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     ||||||||||||||  ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||| |||| ||||| |||||    
T  26802404 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctagaatttt 26802503  T
Q  206 cattcccgtcttgtctatcaactatgcttcttc 238  Q
     ||||| || || |||||||||||||| |||||    
T  26802504 tattcctgtgttttctatcaactatgcctcttc 26802536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 28786140 - 28786363
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||| |||||| || || |||||||| || ||||| ||   |||||||||| | |||||||| | |||||||||||  ||||||     
T  28786140 tcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctctta 28786239  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||   ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||  |||| |||||||||||    
T  28786240 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttt 28786339  T
Q  206 cattcccgtcttgtctatcaacta 229  Q
     ||||| || || |||||||||||    
T  28786340 tattcctgtgttttctatcaacta 28786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 28792261 - 28792484
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||| |||||| || || |||||||| || ||||| ||   |||||||||| | |||||||| | |||||||||||  ||||||     
T  28792261 tcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctctta 28792360  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||   ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||  |||| |||||||||||    
T  28792361 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttt 28792460  T
Q  206 cattcccgtcttgtctatcaacta 229  Q
     ||||| || || |||||||||||    
T  28792461 tattcctgtgttttctatcaacta 28792484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 243
Target Start/End: Original strand, 27678863 - 27679045
Alignment:
Q  61 gtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacga 160  Q
    |||||||||| || ||||| || |  ||||||||||  ||||||  |||||||||||||  ||||||||||||| | |  |  |||||| ||||  | ||    
T  27678863 gtgacactcggtacggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatga 27678962  T
Q  161 aataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||| |||||||||||| ||||||||||| |||||||||||||||| ||||| || || |||||||||||||| ||||||||||    
T  27678963 aatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcat 27679045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 27229094 - 27229331
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || |||| || |||||| || || ||||||||||| ||||| ||   |||||||||  | |||||||| |  ||||||||||  ||||||     
T  27229094 tcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctctta 27229193  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     ||||||||||||||  ||||||||||||||||  || |||||| ||||  ||||||| |||||||||||  ||||||||||| | || ||| |||||||    
T  27229194 ctgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagacgaaatcacaccatcactcgtcaaggccattgacgaatctcggatttt 27229293  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
     |||||| | || |||  ||||||||| ||||||||||    
T  27229294 tattcccatattttctgccaactatgcatcttcttcat 27229331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 27698763 - 27698582
Alignment:
Q  62 tgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaa 161  Q
    |||||||||  | |||||||| | |||||||||||  ||||||  ||||||||||||||  ||||||||||||||||  || |||||| ||||  | |||    
T  27698763 tgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaa 27698664  T
Q  162 ataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    || |||||||||||  ||||||||||| | || ||||||||||| ||||| || || ||| |||||||||| ||||||||||    
T  27698663 atcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctctcaactatgcatcttcttcat 27698582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 28098692 - 28098460
Alignment:
Q  8 ctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgt 107  Q
    |||||| ||||| |||| |||||||||| ||||||| ||||  ||||| ||    |||||||| ||||||||||||| ||||||||||| ||||||| ||    
T  28098692 ctcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatctctacaaagctctttgt 28098593  T
Q  108 gacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttca 207  Q
    |||   ||| ||||||||||||||||  | | ||| ||||| | |||| |   ||| |||| ||| ||| ||||||||||  ||||||| |||||||| |    
T  28098592 gacggaggagtccgcaccttcattgaccataaagatcttcatgaaggtgatagaatcacacaatcccttgtcaaggccatcgaagagtccaggattttaa 28098493  T
Q  208 ttcccgtcttgtctatcaactatgcttcttctt 240  Q
    |||| ||||| ||||  ||||||||||||||||    
T  28098492 ttccggtcttctctaagaactatgcttcttctt 28098460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 26893794 - 26893563
Alignment:
Q  8 ctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgt 107  Q
    |||||||| ||| |||| |||||||||  | || ||||| |  |||||||| | ||||||||| | ||||||||| |   |||| || | ||||||| ||    
T  26893794 ctcttcctcctcgtatggattcacctacgatgtcttcctcaattttagaggctctgacactcgttttggttttacgggtcatctttataaagctctttgt 26893695  T
Q  108 gacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttca 207  Q
    || |  ||||| | ||||||||||||||| | |||||||||  ||||| |||||||  ||||||||||| ||||||| ||| ||||||||| ||| | ||    
T  26893694 gatagtggaattcacaccttcattgatgatacagagcttcatagaggtgacgaaatctcaccatcacttatcaaggcaattgaagagtctatgatataca 26893595  T
Q  208 ttcccgtcttgtctatcaactatgcttcttct 239  Q
    |||| ||| | |||||||||||||||||||||    
T  26893594 ttccagtcctctctatcaactatgcttcttct 26893563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 27677884 - 27677702
Alignment:
Q  61 gtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacga 160  Q
    |||||||||| || ||||| || |  ||||||||||  ||||||  |||||||||||||| ||||||||||||  |    || |||||| ||||  | ||    
T  27677884 gtgacactcggtacggtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaggggatga 27677785  T
Q  161 aataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||| |||||||||||| ||||||||||| |||||||||||||||| ||| | || || |||||||||||||| ||||||||||    
T  27677784 aatcacaccatcacttctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttcat 27677702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 28781001 - 28781227
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || |||| || |||||| || || |||||||| || ||||| ||   |||||||||| | |||||||| |  ||||||||||  ||||||     
T  28781001 tcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 28781100  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||   ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||  |||| |||||||||||    
T  28781101 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttt 28781200  T
Q  206 cattcccgtcttgtctatcaactatgc 232  Q
     ||||| || || ||||||||||||||    
T  28781201 tattcctgtgttttctatcaactatgc 28781227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 26622850 - 26623075
Alignment:
Q  18 tcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaa 117  Q
    |||||| ||||||  || || |||||||| || || |||||  |||||||||| || ||||| |||| |||||||||||  ||||||  |||||||||||    
T  26622850 tcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaa 26622949  T
Q  118 tccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtctt 217  Q
    ||| |||||||||||||||  | || |||||| ||||  ||||||| | ||||||||||  ||| || ||  |||||||||||||||| ||||| || ||    
T  26622950 tccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgtt 26623049  T
Q  218 gtctatcaactatgcttcttcttcat 243  Q
     |||  ||||||||| | ||||||||    
T  26623050 ttctcccaactatgcatattcttcat 26623075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 26728828 - 26729053
Alignment:
Q  18 tcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaa 117  Q
    |||||| ||||||  || || |||||||| || || |||||  |||||||||| || ||||| |||| |||||||||||  ||||||  |||||||||||    
T  26728828 tcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaa 26728927  T
Q  118 tccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtctt 217  Q
    ||| |||||||||||||||  | || |||||| ||||  ||||||| | ||||||||||  ||| || ||  |||||||||||||||| ||||| || ||    
T  26728928 tccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgtt 26729027  T
Q  218 gtctatcaactatgcttcttcttcat 243  Q
     |||  ||||||||| | ||||||||    
T  26729028 ttctcccaactatgcatattcttcat 26729053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 31284205 - 31284382
Alignment:
Q  61 gtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacga 160  Q
    |||||||||| |||||||| || |  ||||||||||  ||||||  |||||||||||||| ||||||||||||||| || || |||||| ||||  | ||    
T  31284205 gtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtgaacttcaaagaggggatga 31284304  T
Q  161 aataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttc 238  Q
    ||| |||||||||||   ||| |||||| |||||||||||||||| || ||||| || |||  ||||||||| |||||    
T  31284305 aatcacaccatcactcgacaatgccattgaagagtctaggatttttatccccgtgttttctgccaactatgcctcttc 31284382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 27605030 - 27604795
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||| |||||| || || ||||||||||| ||||| ||   ||||||||| || |||||||| |  ||||||||||  ||||||     
T  27605030 tcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctctta 27604931  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||| |  |||||||||||||| |  || |||| | ||||  | ||||| |||||| ||||| ||||||||||| | || || ||||||||    
T  27604930 ctgacaagggaattcataccttcattgatgaaaatgatcttcgaagaggagatgaaatcacaccagcacttctcaaggccattgatgaatccaggatttt 27604831  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttc 241  Q
     ||||| || || |||||||| ||||| ||||||||    
T  27604830 tattcctgtgttttctatcaaatatgcctcttcttc 27604795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 26646396 - 26646574
Alignment:
Q  61 gtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacga 160  Q
    ||||||||||  | |||||||||| | |||||||||  ||||||  |||||||||||| | |||||||||||||||  | || ||| |  ||||  | ||    
T  26646396 gtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatga 26646495  T
Q  161 aataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttct 239  Q
    ||| |||||||||||  ||||||||||| |||| ||||||||||| ||||| || || |||||||||||||| ||||||    
T  26646496 aatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttct 26646574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 26752364 - 26752542
Alignment:
Q  61 gtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacga 160  Q
    ||||||||||  | |||||||||| | |||||||||  ||||||  |||||||||||| | |||||||||||||||  | || ||| |  ||||  | ||    
T  26752364 gtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatga 26752463  T
Q  161 aataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttct 239  Q
    ||| |||||||||||  ||||||||||| |||| ||||||||||| ||||| || || |||||||||||||| ||||||    
T  26752464 aatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttct 26752542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 28149916 - 28150036
Alignment:
Q  122 caccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtct 221  Q
    ||||||||||||||| |  |||||| || ||||  ||||||| ||||||||||| | |||||||||| ||||||| ||||||||||||||  |||| |||    
T  28149916 caccttcattgatgatacggagctttaacgaggggacgaaatcacaccatcactct-caaggccattgaagagtccaggattttcattccaatcttctct 28150014  T
Q  222 atcaactatgcttcttcttcat 243  Q
    ||||||||| ||||||||||||    
T  28150015 atcaactatacttcttcttcat 28150036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 241
Target Start/End: Original strand, 29825949 - 29826124
Alignment:
Q  66 actcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataa 165  Q
    ||||||| ||||||||| |  |||||||||| ||||||   |||||||  ||| ||||||||||||||||||| |||||||||| ||||  ||||||| |    
T  29825949 actcgctttggttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaaagagcttcaaagaggggacgaaatca 29826048  T
Q  166 caccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttc 241  Q
    |||| |||||| | ||||| ||| |||| ||||||||   ||||||  | || |||| ||| ||||||||||||||    
T  29826049 caccctcacttgtgaaggcaattcaagaatctaggatagccattcctattttctctaccaattatgcttcttcttc 29826124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 27706672 - 27706490
Alignment:
Q  61 gtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacga 160  Q
    |||||||||| || ||||| || |  ||||||||||  ||| ||  |||||||||||||| ||||||||||||  |    || |||||| || |  | ||    
T  27706672 gtgacactcggtacggtttcacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaagggatga 27706573  T
Q  161 aataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||| |||||||||||| ||||||||||| |||||||||||||||| ||||| || || ||||||| |||||| ||||||||||    
T  27706572 aatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcacctatgcctcttcttcat 27706490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 27338334 - 27338153
Alignment:
Q  62 tgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaa 161  Q
    ||||||||  || |||||||| |  ||||||||||  ||||||  |||||||||||||   ||||||||||||||||  || ||| || ||||  | |||    
T  27338334 tgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaa 27338235  T
Q  162 ataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |  |||||||||||| ||||||||||| |||||||||||||||| |||||| | || |||   |||||||| ||||||||||    
T  27338234 agcacaccatcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcat 27338153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 27399074 - 27398893
Alignment:
Q  62 tgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaa 161  Q
    ||||||||  || |||||||| |  ||||||||||  ||||||  |||||||||||||   ||||||||||||||||  || ||| || ||||  | |||    
T  27399074 tgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaa 27398975  T
Q  162 ataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |  |||||||||||| ||||||||||| |||||||||||||||| |||||| | || |||   |||||||| ||||||||||    
T  27398974 agcacaccatcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcat 27398893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 25579682 - 25579818
Alignment:
Q  107 tgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttc 206  Q
    |||||||||||| || |||||| ||||||| |  || |||||| ||||  | ||||| |||||||||||| ||||||||||| |||| |||||||||||     
T  25579682 tgacaagggaattcgtaccttctttgatgataatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggattttt 25579781  T
Q  207 attcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||| | || |||  ||||||||| ||||||||||    
T  25579782 attcccatattttctgccaactatgcatcttcttcat 25579818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 25481705 - 25481841
Alignment:
Q  107 tgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttc 206  Q
    |||||||||||| || || ||||||||||| |  || |||||| ||||  | ||||| |||||||||||| ||||||||||| |||| ||||||||||      
T  25481705 tgacaagggaattcgtactttcattgatgaaaatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttgt 25481804  T
Q  207 attcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||| | || |||  ||||||||| ||||||||||    
T  25481805 attcccatattttctgccaactatgcatcttcttcat 25481841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 26142828 - 26142964
Alignment:
Q  107 tgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttc 206  Q
    |||||||||||| || || ||||||||||| |  || ||| || ||||  | ||||| |||||||||||| ||||||||||| |||| |||||||||||     
T  26142828 tgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggattttt 26142927  T
Q  207 attcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||| | || |||  ||||||||| ||||||||||    
T  26142928 attcccatattttctgccaactatgcatcttcttcat 26142964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 243
Target Start/End: Complemental strand, 27531465 - 27531285
Alignment:
Q  63 gacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaa 162  Q
    ||||||||| | |||||||| | |||||||||||  ||||||  |||||||||||||   ||||||||||||||||  || |||||| ||||  | ||||    
T  27531465 gacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattgatgacaatgatcttcaaagaggagatgaaa 27531366  T
Q  163 taacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    | |||||||||||    || |||||| || | ||||||||||| |||||||| || |||   |||||||| ||||||||||    
T  27531365 tcacaccatcactaaaaaatgccattgaaaaatctaggatttttattcccgtattttctgaaaactatgcatcttcttcat 27531285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 26936959 - 26937193
Alignment:
Q  9 tcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtg 108  Q
    ||||||||||| |||| |||||||||| |||||||||| || || |||||    ||||||||||    ||||| ||   |||| |||| ||||||| |||    
T  26936959 tcttccttctcttatggattcacctatgacgtgttcctcagtttcagaggcaccgacactcgcttccattttattggtcatctttacaaagctctttgtg 26937058  T
Q  109 acaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcat 208  Q
    |    ||||| |||||||||||||||||||  ||||| || |||||  | ||||| |||||||||||| ||||||| ||| |||| ||  |||||  |||    
T  26937059 attgtggaattcgcaccttcattgatgacaaggagctccatggaggagaagaaatcacaccatcacttgtcaaggcaattgaagattccgggattgccat 26937158  T
Q  209 tcccgtcttgtctatcaactatgcttcttcttcat 243  Q
     || || || ||||||||||||||  |||||||||    
T  26937159 acctgtattctctatcaactatgccacttcttcat 26937193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 26861478 - 26861715
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    ||||||||| | ||||||| |||||  || || || ||||| || || |||||  |||||||||| ||||||||||| |  ||||||||||  ||||||     
T  26861478 tcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctctacaaggctctta 26861577  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||| | ||||||||| |||||  | || |||||| ||||  | ||||| | |  ||||||   ||| |||||| |||||||||| |||||    
T  26861578 ctgacaagggaattcacaccttcatggatgatcgtgaacttcaaagaggggatgaaatcaaaagatcactcgacaatgccattgaagagtctagaatttt 26861677  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||| || || |||  ||||||||| ||||| ||||    
T  26861678 cattcctgtgttttctgccaactatgcctcttcgtcat 26861715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 26811453 - 26811534
Alignment:
Q  88 atctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacacc 169  Q
    ||||||| | ||||||| ||||||| |||||||| ||||||||||||||||  ||||||||  ||||| ||||||| |||||    
T  26811453 atctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 26811534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 27214360 - 27214436
Alignment:
Q  87 aatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaat 163  Q
    |||||||| | ||||||| ||||||| |||||||| ||||||||||||||||  ||||||||  ||||| |||||||    
T  27214360 aatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaat 27214436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 27234868 - 27234792
Alignment:
Q  87 aatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaat 163  Q
    |||||||| | ||||||| ||||||| |||||||| ||||||||||||||||  ||||||||  ||||| |||||||    
T  27234868 aatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaat 27234792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 25538555 - 25538639
Alignment:
Q  159 gaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||||| |||||||||||| ||||||||||  |||| ||||| ||||| |||||| | || |||  ||||||||| ||||||||||    
T  25538555 gaaatcacaccatcacttgtcaaggccatcgaagaatctagaatttttattcccatattttctgccaactatgcatcttcttcat 25538639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 243
Target Start/End: Original strand, 26655932 - 26656088
Alignment:
Q  87 aatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggcca 186  Q
    ||||||||||  ||||||  ||| ||||||||||  || |||||||||||||  || ||||   ||||  | ||||| |||||||||||  | |||||||    
T  26655932 aatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcgttaaggcca 26656031  T
Q  187 ttaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    || |||| || |||||||| |||||| | || |||  ||||||||| ||||||||||    
T  26656032 ttgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcat 26656088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 243
Target Start/End: Original strand, 26761903 - 26762059
Alignment:
Q  87 aatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggcca 186  Q
    ||||||||||  ||||||  ||| ||||||||||  || |||||||||||||  || ||||   ||||  | ||||| |||||||||||  | |||||||    
T  26761903 aatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcgttaaggcca 26762002  T
Q  187 ttaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    || |||| || |||||||| |||||| | || |||  ||||||||| ||||||||||    
T  26762003 ttgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcat 26762059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 28149593 - 28149625
Alignment:
Q  62 tgacactcgctatggttttactgaaaatctcta 94  Q
    |||||||||||||||||||||||||||||||||    
T  28149593 tgacactcgctatggttttactgaaaatctcta 28149625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 26617269 - 26617351
Alignment:
Q  87 aatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacacc 169  Q
    |||||||| | ||||||| ||||||| ||| |||| ||||||||||||||||  ||||||||  ||||| | ||||| |||||    
T  26617269 aatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacacc 26617351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 26723197 - 26723279
Alignment:
Q  87 aatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacacc 169  Q
    |||||||| | ||||||| ||||||| ||| |||| ||||||||||||||||  ||||||||  ||||| | ||||| |||||    
T  26723197 aatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacacc 26723279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 28491825 - 28491663
Alignment:
Q  26 attcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcacc 125  Q
    |||||||||| | ||||||||||||||| |||||   || |||||||| ||||| |||| |||||| |  | |||||| | |||||| ||| |||| ||     
T  28491825 attcacctatgatgtgttccttagctttcgaggtgaggatactcgctacggtttcactggaaatctatggaaagctctccatgacaaaggagtccgtact 28491726  T
Q  126 ttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccatt 188  Q
    ||||| || |||   |||||||||  |||| | ||||| |||||||||||  |||| ||||||    
T  28491725 ttcatggacgacgaggagcttcaaaaaggtgaagaaatcacaccatcactcatcaaagccatt 28491663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 29804235 - 29804073
Alignment:
Q  26 attcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcacc 125  Q
    |||||||||| | ||||||||||||||| |||||   || |||||||| ||||| |||| |||||| |  | |||||| | |||||| ||| |||| ||     
T  29804235 attcacctatgatgtgttccttagctttcgaggtgaggatactcgctacggtttcactggaaatctatggaaagctctccatgacaaaggagtccgtact 29804136  T
Q  126 ttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccatt 188  Q
    ||||| || |||   |||||||||  |||| | ||||| |||||||||||  |||| ||||||    
T  29804135 ttcatggacgacgaggagcttcaaaaaggtgaagaaatcacaccatcactcatcaaagccatt 29804073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 26055908 - 26056025
Alignment:
Q  126 ttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatca 225  Q
    ||||||||||| |  || |||||| ||||  | ||||| ||| |||||||| ||||||||||  |||| ||| ||||||| |||||| | || |||  ||    
T  26055908 ttcattgatgaaaatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgcca 26056007  T
Q  226 actatgcttcttcttcat 243  Q
    ||||||| ||||||||||    
T  26056008 actatgcatcttcttcat 26056025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 26075878 - 26075995
Alignment:
Q  126 ttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatca 225  Q
    ||||||||||| |  || |||||| ||||  | ||||| ||| |||||||| ||||||||||  |||| ||| ||||||| |||||| | || |||  ||    
T  26075878 ttcattgatgaaaatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgcca 26075977  T
Q  226 actatgcttcttcttcat 243  Q
    ||||||| ||||||||||    
T  26075978 actatgcatcttcttcat 26075995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 2184303 - 2184387
Alignment:
Q  159 gaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||||||||| |||||||| | || |||||| ||||||| || |||||||| || || || || |  |||||||||||||||||||    
T  2184303 gaaataacagcatcacttatgaaagccattgaagagtccagaattttcatccctgttttctcaaagaactatgcttcttcttcat 2184387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 26823879 - 26823939
Alignment:
Q  183 gccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||| |||||||||||||||| ||||| || || |||  ||||||||| ||||||||||    
T  26823879 gccattgaagagtctaggatttttattcctgtgttttctgccaactatgcctcttcttcat 26823939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 26949624 - 26949692
Alignment:
Q  107 tgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcact 175  Q
    ||||||||||||||| |||||||||||||| |  ||||||||   |||| ||||||| ||||| |||||    
T  26949624 tgacaagggaatccgaaccttcattgatgataaggagcttcagaaaggtgacgaaatcacaccttcact 26949692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 34585 - 34824
Alignment:
Q  4 cctcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctct 103  Q
    |||| ||||| |||||||||| |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  34585 cctcttcttctttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctct 34684  T
Q  104 tcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatt 203  Q
    | || |||||||||||| |||||||||||||||||| ||||||||||||||  | |||||||||||||||||||||||||||||| ||||||||||||||    
T  34685 ttgtcacaagggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggatt 34784  T
Q  204 ttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  34785 ttcattcctgtcttgtctatcaattatgcttcttcttcat 34824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 42825 - 43065
Alignment:
Q  3 tcctcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctc 102  Q
    |||||||||||| |||||||||  || |||||| | || |||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||| || ||    
T  42825 tcctcctcttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatc 42924  T
Q  103 ttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggat 202  Q
    || || | |||||||| ||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  42925 tttgtaagaagggaattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggat 43024  T
Q  203 tttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  43025 tttcattcctgtcttgtctatcaattatgcttcttcttcat 43065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 116653 - 116893
Alignment:
Q  1 cttcctcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagc 100  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||| ||     
T  116653 cttcctcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaaga 116752  T
Q  101 tcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctagg 200  Q
    |||| ||   ||| |||| || |||||||||||||||| ||| |||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  116753 tctttgtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctagg 116852  T
Q  201 attttcattcccgtcttgtctatcaactatgcttcttcttc 241  Q
    |||||||||||  | ||||||||||| ||||||||||||||    
T  116853 attttcattcctattttgtctatcaattatgcttcttcttc 116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 27313 - 27547
Alignment:
Q  9 tcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtg 108  Q
    ||||||||||| |||| |||||||||| ||||||||||||| |||||||||  ||||||||| ||||||||||||| |||||||||||| | |||| ||     
T  27313 tcttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgta 27412  T
Q  109 acaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcat 208  Q
    | |||||||| | ||| ||| ||||||| |||||||||||||||||| | ||||||||| ||||||||||||||| |||| |||| ||||||||||||||    
T  27413 agaagggaattcacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcat 27512  T
Q  209 tcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    ||| |||||||||||||| ||||||||||||||||    
T  27513 tcctgtcttgtctatcaattatgcttcttcttcat 27547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 3279555 - 3279783
Alignment:
Q  11 ttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtgac 110  Q
    ||||||||| |||| |||||||||| |||| ||| | || ||||| ||   ||||||||||||||||||||||| ||||||||| |||||| |  |||||    
T  3279555 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctatagagctttaagtgac 3279654  T
Q  111 aagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattc 210  Q
       ||| || |||||||||||||||| || |||||||| |||||| | ||||| |||| ||||||| ||||||||||  ||||||| | |||||| ||||    
T  3279655 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 3279754  T
Q  211 ccgtcttgtctatcaactatgcttcttct 239  Q
    | ||||| |||||||||||||||||||||    
T  3279755 cggtcttctctatcaactatgcttcttct 3279783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 17993949 - 17993846
Alignment:
Q  66 actcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataa 165  Q
    ||||| |||||||| || |  |||||||| | |||||||  |||||||||||| || |||||||| ||||||| |||||||||  ||||| | ||||| |    
T  17993949 actcgatatggtttcaccggtaatctctataaagctctttctgacaagggaattcgaaccttcatcgatgacaaagagcttcagagaggtgatgaaatca 17993850  T
Q  166 cacc 169  Q
    ||||    
T  17993849 cacc 17993846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 5091279 - 5091044
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| |||||||| | ||| |||||  |||| || ||||| ||||||||    |||||||| || |||||||||| |||||||||   |||||| |    
T  5091279 tcctcttctttctcctacggatttacctacgacgtctttcttagttttagaggcaccgacactcgttacggttttactggaaatctctatgaagctctac 5091180  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
    ||| ||||||||| | |||||||||||||||||||||||||||  ||||  || |||||||||| |||||| ||||||||||| |||| |||| |||| |    
T  5091179 gtgtcaagggaattcacaccttcattgatgacagagagcttcagcgaggagaccaaataacaccgtcacttctcaaggccattcaagaatctaagattgt 5091080  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttc 241  Q
    ||||  ||| || |||| | ||||||||||||||||    
T  5091079 cattatcgttttctctaaccactatgcttcttcttc 5091044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 18731816 - 18731579
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||  |||||| || || |||||||| ||||| || ||  ||||||||||  | ||||||||||   |||||||||||||||||     
T  18731816 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttttactggccatctctacagagctctta 18731717  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||| |||||||||||||||| | || || ||| ||||  | ||||| | |||||||||   ||| |||||| ||||||||||||| ||    
T  18731716 ctgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatctt 18731617  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||| || || |||||||||||||| ||||||||||    
T  18731616 cattcctgtgttttctatcaactatgcctcttcttcat 18731579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 18655789 - 18655552
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||  |||||| || || |||||||| ||||| || ||  ||||||||||  | ||||||||||   ||||||||| |||||||     
T  18655789 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctctta 18655690  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||| |||||||||||||||| | ||||| ||| | ||  | ||||| | |||||||||   ||| |||||| ||||||||||||| ||    
T  18655689 ctgacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggatgaaatcaaaccatcactcgacaatgccattcaagagtctaggatctt 18655590  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
     ||||| || || |||||||||||||| ||||||||||    
T  18655589 tattcctgtgttttctatcaactatgcctcttcttcat 18655552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 18724397 - 18724160
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||  |||||| || || |||||||| ||||| || ||  ||||||||||  | ||||||||||   |||||||||  ||||||     
T  18724397 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctctta 18724298  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||| |||||||||||||||| | || || ||| ||||  | ||||| | |||||||||   ||| |||||| ||||||||||||| ||    
T  18724297 ctgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatctt 18724198  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||| || || |||||||||||||| ||||||||||    
T  18724197 cattcctgtgttttctatcaactatgcctcttcttcat 18724160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 18699712 - 18699475
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||  |||||| || || |||||||| ||||| || ||   |||||||||  | ||||||||||   ||||||||| |||||||     
T  18699712 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtgacggttttactggccatctctacaaagctctta 18699613  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||| |||||||||||||||| | || || ||| | ||  | ||||| | |||||||||   ||| |||||| ||||||||||||| ||    
T  18699612 ctgacaagggaatccacaccttcattgatgaccgtgacctgcaaagtggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatctt 18699513  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||||| || || |||||||||||||| ||||||||||    
T  18699512 cattcctgtgttttctatcaactatgcctcttcttcat 18699475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 18679877 - 18679642
Alignment:
Q  8 ctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgt 107  Q
    |||||| || ||||||  |||||| || || |||||||| ||||| || ||  ||||||||||  | ||||||||||   |||||||||  ||||||  |    
T  18679877 ctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttact 18679778  T
Q  108 gacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggattttca 207  Q
    ||||| ||||||| |||||||||||||||| | || || ||| ||||  | ||||| | |||||||||   ||| |||||| ||||||||||||| ||||    
T  18679777 gacaaaggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttca 18679678  T
Q  208 ttcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    |||| || || |||||||||||||| ||||||||||    
T  18679677 ttcctgtgttttctatcaactatgcctcttcttcat 18679642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 3747 - 3509
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||| |||||| || || ||||||||||| ||||| ||   |||||||||  | |||||||| | |||||||||||  ||||||     
T  3747 tcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctctta 3648  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     ||||||||||||||  ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||| | || |||||||||||    
T  3647 ctgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttt 3548  T
Q  206 cattcccgtcttgtctatcaa-ctatgcttcttcttcat 243  Q
     ||||| || || |||||||| |||||| ||||||||||    
T  3547 tattcctgtgttttctatcaacctatgcctcttcttcat 3509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 232
Target Start/End: Complemental strand, 14624 - 14454
Alignment:
Q  62 tgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaa 161  Q
    |||||||||  | |||||||| | |||||||||||  ||||||  ||||||||||||||  ||||||||||||||||  || |||||| ||||  | |||    
T  14624 tgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaa 14525  T
Q  162 ataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgc 232  Q
    || |||||||||||  ||||||||||| | || ||||||||||| ||||| || || ||||||||||||||    
T  14524 atcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgc 14454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 31903728 - 31903910
Alignment:
Q  21 tatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatcc 120  Q
    |||| |||||||||  | |||||||| ||||||||||| |  |||||||||||||||||||||| ||||||||||| |||||||  ||| ||||||||||    
T  31903728 tatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagctctttatgataagggaatcc 31903827  T
Q  121 gcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatt 203  Q
     |||||| ||||| ||   ||| |||||| ||||  | ||||| ||||||||||||||  |||| ||| ||||||||||||||    
T  31903828 acacctttattgacgatgaagaacttcaaagaggacatgaaatcacaccatcacttttagaggcaattgaagagtctaggatt 31903910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 29274095 - 29273858
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    ||||||||  |||| |||| |||||| || || || ||||| | |||||||||  ||||||||||  | ||||||| ||   |||||||||   |||||     
T  29274095 tcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggttttattggccatctctacaagactctta 29273996  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||| |||||||||||||||  | || |||||| ||||  | ||||| | | |||||||   ||| | |||| |||||||||| |||||    
T  29273995 ctgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaatcatcactcgacaatgtcattgaagagtctagaatttt 29273896  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
     ||||| || || |||||||||||||| ||||||||||    
T  29273895 tattcctgtgttttctatcaactatgcctcttcttcat 29273858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 242 - 19
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || || |||| |||||| || || ||||||||||| ||||| ||   |||||||||| | |||||||| |  ||||||||||  ||||||     
T  242 tcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 143  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||   ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||  |||| |||||||||||    
T  142 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttt 43  T
Q  206 cattcccgtcttgtctatcaacta 229  Q
     ||||| || || |||||||||||    
T  42 tattcctgtgttttctatcaacta 19  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 7387 - 7610
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || || |||| |||||| || || ||||||||||| ||||| ||   |||||||||| | |||||||| |  ||||||||||  ||||||     
T  7387 tcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 7486  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||   ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||  |||| |||||||||||    
T  7487 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttt 7586  T
Q  206 cattcccgtcttgtctatcaacta 229  Q
     ||||| || || |||||||||||    
T  7587 tattcctgtgttttctatcaacta 7610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 13957 - 13734
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || |||| || |||||| || || |||||||| || ||||| ||   |||||||||| | |||||||| |  ||||||||||  ||||||     
T  13957 tcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 13858  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||   ||||||||||||||||  || |||||| ||||  | ||||| |||||||||||  ||||||||||  |||| |||||||||||    
T  13857 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttt 13758  T
Q  206 cattcccgtcttgtctatcaacta 229  Q
     ||||| || || |||||||||||    
T  13757 tattcctgtgttttctatcaacta 13734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 4996 - 4761
Alignment:
Q  6 tcctcttccttctcctatgaattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactgaaaatctctacagagctcttc 105  Q
    |||||||| || ||||||| |||||| || || |||||||| || ||||| ||   |||||||||| | |||||||| | |||||||||||  ||||||     
T  4996 tcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggctctta 4897  T
Q  106 gtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 205  Q
     |||||||||||||   ||||||||||||||||  || |||||| ||||  | ||||| |||||||| ||   |||||||||| | || |||||||||||    
T  4896 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatccctccgcaaggccattgatgaatctaggatttt 4797  T
Q  206 cattcccgtcttgtctatcaactatgcttcttcttc 241  Q
     ||||| || || ||||||  |||||| | ||||||    
T  4796 tattcctgtgttttctatcttctatgccttttcttc 4761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 243
Target Start/End: Complemental strand, 268587 - 268432
Alignment:
Q  88 atctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaaataacaccatcacttttcaaggccat 187  Q
    |||||||||  ||||||  |||||||||||||| |||||||||||||||  | || |||||| ||||  | ||||| | |||||||||   ||| |||||    
T  268587 atctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaaccatcactcgacaatgccat 268488  T
Q  188 taaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcat 243  Q
    | |||||||||||||||| ||||| || || |||||||||||||| ||||||||||    
T  268487 tgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcat 268432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 16688929 - 16689070
Alignment:
Q  62 tgacactcgctatggttttactgaaaatctctacagagctcttcgtgacaagggaatccgcaccttcattgatgacagagagcttcaaggaggtaacgaa 161  Q
    ||||||||||| |  ||||||||  ||||| |||| ||||||  ||||||||||||||||   ||||||||||||||  || |||||  ||||| || ||    
T  16688929 tgacactcgctttcattttactggtaatctgtacaaagctctatgtgacaagggaatccgtgtcttcattgatgacaaggaacttcagagaggtgacaaa 16689028  T
Q  162 ataacaccatcacttttcaaggccattaaagagtctaggatt 203  Q
    || |||||||||||| ||||||| ||| |||| || ||||||    
T  16689029 atcacaccatcacttatcaaggcaattgaagactcaaggatt 16689070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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