View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10501_low_44 (Length: 252)

Name: NF10501_low_44
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10501_low_44
NF10501_low_44
[»] chr5 (19 HSPs)
chr5 (6-241)||(39468161-39468394)
chr5 (197-241)||(40147564-40147608)
chr5 (195-241)||(32637146-32637192)
chr5 (197-241)||(534081-534125)
chr5 (197-241)||(3075551-3075595)
chr5 (197-241)||(30682724-30682768)
chr5 (195-241)||(538343-538389)
chr5 (197-241)||(13488523-13488567)
chr5 (197-241)||(28750457-28750501)
chr5 (197-241)||(42426037-42426081)
chr5 (192-239)||(5887232-5887278)
chr5 (202-241)||(42428237-42428276)
chr5 (197-241)||(19806685-19806727)
chr5 (192-241)||(31183296-31183344)
chr5 (197-241)||(38747307-38747351)
chr5 (197-241)||(13240074-13240117)
chr5 (197-241)||(16649637-16649680)
chr5 (197-241)||(33832001-33832044)
chr5 (64-119)||(39468157-39468213)
[»] chr4 (19 HSPs)
chr4 (195-241)||(52467157-52467203)
chr4 (197-241)||(12739355-12739399)
chr4 (197-241)||(26175438-26175482)
chr4 (197-237)||(12743730-12743770)
chr4 (197-241)||(36994852-36994896)
chr4 (197-241)||(37740948-37740992)
chr4 (197-241)||(9927260-9927304)
chr4 (197-241)||(48893445-48893488)
chr4 (197-241)||(56178438-56178481)
chr4 (192-241)||(45686984-45687032)
chr4 (197-238)||(52095164-52095204)
chr4 (197-241)||(36463198-36463241)
chr4 (197-241)||(46147197-46147241)
chr4 (197-241)||(50262489-50262533)
chr4 (197-241)||(52082465-52082508)
chr4 (197-241)||(54199710-54199753)
chr4 (198-241)||(47038219-47038261)
chr4 (197-241)||(48143371-48143415)
chr4 (197-241)||(41639755-41639799)
[»] chr1 (21 HSPs)
chr1 (191-241)||(28220022-28220072)
chr1 (197-242)||(37559666-37559711)
chr1 (197-241)||(28223223-28223267)
chr1 (197-241)||(833972-834015)
chr1 (197-241)||(8550586-8550629)
chr1 (197-241)||(13137782-13137826)
chr1 (197-241)||(30476248-30476292)
chr1 (197-241)||(37503364-37503407)
chr1 (197-240)||(40122003-40122045)
chr1 (197-241)||(19752986-19753030)
chr1 (201-241)||(28265365-28265404)
chr1 (197-241)||(45644160-45644203)
chr1 (201-240)||(4552454-4552493)
chr1 (192-239)||(44455485-44455531)
chr1 (197-239)||(1833833-1833874)
chr1 (197-241)||(3846923-3846966)
chr1 (197-237)||(10925549-10925588)
chr1 (197-241)||(13659153-13659196)
chr1 (197-241)||(31659561-31659604)
chr1 (197-241)||(41361233-41361276)
chr1 (197-241)||(49918673-49918716)
[»] chr8 (12 HSPs)
chr8 (197-241)||(15213109-15213153)
chr8 (194-241)||(41366417-41366463)
chr8 (199-241)||(3303474-3303516)
chr8 (197-241)||(4743029-4743073)
chr8 (197-241)||(6599288-6599331)
chr8 (197-241)||(6674741-6674784)
chr8 (197-241)||(5689590-5689633)
chr8 (197-241)||(12702433-12702476)
chr8 (197-241)||(30143663-30143706)
chr8 (200-241)||(43036745-43036786)
chr8 (197-241)||(4731981-4732024)
chr8 (197-241)||(19491505-19491548)
[»] chr7 (27 HSPs)
chr7 (197-241)||(6430450-6430494)
chr7 (197-241)||(14069635-14069679)
chr7 (197-241)||(14379663-14379707)
chr7 (197-241)||(18126969-18127013)
chr7 (197-241)||(23555364-23555408)
chr7 (197-239)||(26417641-26417683)
chr7 (199-241)||(43864567-43864609)
chr7 (197-241)||(31732770-31732814)
chr7 (197-241)||(47675938-47675982)
chr7 (192-241)||(41648811-41648859)
chr7 (200-241)||(47673749-47673790)
chr7 (197-241)||(2360774-2360818)
chr7 (197-241)||(4510341-4510385)
chr7 (197-241)||(4512183-4512227)
chr7 (197-241)||(19502501-19502545)
chr7 (197-241)||(38671027-38671070)
chr7 (197-241)||(41317240-41317284)
chr7 (197-241)||(1113975-1114019)
chr7 (197-241)||(4586484-4586528)
chr7 (197-241)||(48489754-48489797)
chr7 (195-238)||(4508497-4508540)
chr7 (200-241)||(22270275-22270316)
chr7 (192-241)||(27348140-27348188)
chr7 (197-241)||(25616178-25616221)
chr7 (197-241)||(30814724-30814768)
chr7 (197-241)||(31105202-31105245)
chr7 (197-241)||(36146214-36146257)
[»] chr6 (6 HSPs)
chr6 (197-241)||(602905-602949)
chr6 (197-241)||(26954093-26954136)
chr6 (197-241)||(14521480-14521523)
chr6 (195-241)||(3038727-3038772)
chr6 (197-241)||(17758355-17758400)
chr6 (197-238)||(28137213-28137253)
[»] chr3 (21 HSPs)
chr3 (197-241)||(4160061-4160105)
chr3 (197-241)||(29813384-29813428)
chr3 (197-241)||(29196191-29196235)
chr3 (197-241)||(5236259-5236302)
chr3 (197-241)||(22834809-22834852)
chr3 (197-241)||(23391714-23391758)
chr3 (197-241)||(23410133-23410177)
chr3 (201-241)||(39153170-39153210)
chr3 (197-239)||(9666272-9666313)
chr3 (197-239)||(29811193-29811235)
chr3 (197-241)||(761167-761209)
chr3 (191-240)||(44700280-44700328)
chr3 (197-241)||(40734820-40734863)
chr3 (197-241)||(51399137-51399180)
chr3 (197-227)||(21350813-21350843)
chr3 (197-241)||(6095392-6095437)
chr3 (197-241)||(7764788-7764832)
chr3 (197-230)||(44330950-44330983)
chr3 (197-241)||(31314763-31314806)
chr3 (197-241)||(32891413-32891456)
chr3 (197-233)||(40913608-40913644)
[»] chr2 (17 HSPs)
chr2 (197-241)||(11690810-11690854)
chr2 (197-241)||(723549-723592)
chr2 (197-241)||(11151397-11151441)
chr2 (197-241)||(24885908-24885951)
chr2 (197-241)||(34139575-34139618)
chr2 (197-241)||(36317815-36317859)
chr2 (197-241)||(36987877-36987920)
chr2 (197-241)||(42362668-42362711)
chr2 (197-241)||(2334220-2334263)
chr2 (197-241)||(6594806-6594849)
chr2 (197-241)||(17057171-17057214)
chr2 (197-241)||(17085154-17085197)
chr2 (197-241)||(29868191-29868235)
chr2 (197-241)||(33162256-33162299)
chr2 (197-241)||(36773881-36773924)
chr2 (197-241)||(14633630-14633673)
chr2 (197-241)||(39285157-39285200)
[»] scaffold1668 (1 HSPs)
scaffold1668 (197-241)||(1303-1347)
[»] scaffold0066 (1 HSPs)
scaffold0066 (197-241)||(20218-20260)
[»] scaffold0006 (1 HSPs)
scaffold0006 (197-241)||(148914-148957)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 39468161 - 39468394
Alignment:
Q  6 agaagcaaagggattagacaagagagaatatgaaaaa-gcagattcaagaagatgataaaagcaaaatcaaagggattagacaaaagagaatatgtaaaa 104  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  39468161 agaatcaaagggattagacaagagagaatataaaaaaagcagattcaagaagatgataaaagcaatatcaaagcgattagacaaaggagaatatgtaaaa 39468260  T
Q  105 gcagattgaagaagaaacaatgatggcggcaagatgagaggaatgagaatggagtagttcattgaattgatgaattatgggcatggattttattgtgaat 204  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  39468261 gcagattgaag---aaacaatgatggcggcaagatgagaggaatgagaatggagtagttcattgaattgatgaattatgggcatggattctgttgtgaat 39468357  T
Q  205 tcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||| |||||||||| ||||||||||||||||||||||    
T  39468358 tcgaactcaaaacttacaccaatacaaactatgatgt 39468394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 40147608 - 40147564
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40147608 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 40147564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 32637192 - 32637146
Alignment:
Q  195 tattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  32637192 tattgtgaattcggattcaaaactcacaccaatacaaactatgatgt 32637146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 534125 - 534081
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  534125 ttgtgaattcggactcaaaactcacaccaatagaaactatgatgt 534081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 3075551 - 3075595
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  3075551 ttgtgaattcggactaaaaactcacaccaatacaaactatgatgt 3075595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 30682724 - 30682768
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  30682724 ttgtgaatacggactcaaaactcacaccaatacaaactatgatgt 30682768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 538389 - 538343
Alignment:
Q  195 tattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  538389 tattgtgaattcagactcaaaactcacaccaatataaactatgatgt 538343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 13488567 - 13488523
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  13488567 ttgtgaattcggactcaaatctcacaccaatacaaaatatgatgt 13488523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 28750457 - 28750501
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  28750457 ttgtgaatttggactcaaaactcacaccaatacaaattatgatgt 28750501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 42426037 - 42426081
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||    
T  42426037 ttgtgaattcgaactcaaaactcacacaaatacaaactatgatgt 42426081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 5887232 - 5887278
Alignment:
Q  192 ttttattgtgaattcggactcaaaactcacaccaatacaaactatgat 239  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  5887232 ttttgttgtgaattcggactcaaaa-tcacaccaatacaaactatgat 5887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 42428237 - 42428276
Alignment:
Q  202 aattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  42428237 aattcgaactcaaaactcacaccaatacaaactatgatgt 42428276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 19806727 - 19806685
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  19806727 ttgtgaattcggactcaaaact--caccaatacaaactatgatgt 19806685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 31183344 - 31183296
Alignment:
Q  192 ttttattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||| |||||||||||||||||||| |||||||||||||||| |||||||    
T  31183344 ttttgttgtgaattcggactcaaaa-tcacaccaatacaaaccatgatgt 31183296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 38747351 - 38747307
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||    
T  38747351 ttgtgaatttggactcaaatttcacaccaatacaaactatgatgt 38747307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 13240117 - 13240074
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||    
T  13240117 ttgtgaattcgaactcaaaa-tcacactaatacaaactatgatgt 13240074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 16649637 - 16649680
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||||    
T  16649637 ttgtgaattcgaactcaaaa-tcataccaatacaaactatgatgt 16649680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 33832044 - 33832001
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| | |||| |||||||||||||||||    
T  33832044 ttgtgaattcggactcaaaa-ttacacaaatacaaactatgatgt 33832001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 39468157 - 39468213
Alignment:
Q  64 aagcaaaatcaaagggattagacaaaagagaatat-gtaaaagcagattgaagaaga 119  Q
    ||||| ||||||||||||||||||| |||||||||   ||||||||||| |||||||    
T  39468157 aagcagaatcaaagggattagacaagagagaatataaaaaaagcagattcaagaaga 39468213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 52467157 - 52467203
Alignment:
Q  195 tattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  52467157 tattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 52467203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 12739355 - 12739399
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12739355 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 12739399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 26175438 - 26175482
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26175438 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 26175482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 12743730 - 12743770
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatg 237  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12743730 ttgtgaattcggactcaaaactcacaccaatacaaactatg 12743770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 36994896 - 36994852
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  36994896 ttgtgaattctgactcaaaactcacaccaatacaaactatgatgt 36994852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 37740992 - 37740948
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  37740992 ttgtaaattcggactcaaaactcacaccaatacaaactatgatgt 37740948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 9927260 - 9927304
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  9927260 ttgtgaattcggactcaaaactcgcaccaatataaactatgatgt 9927304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 48893445 - 48893488
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  48893445 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 48893488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 56178438 - 56178481
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  56178438 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 56178481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 45686984 - 45687032
Alignment:
Q  192 ttttattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  45686984 ttttgttgtgaattcagactcaaaa-tcacaccaatacaaactatgatgt 45687032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 52095164 - 52095204
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatga 238  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  52095164 ttgtgaattcggactcaaaa-tcacaccaatacaaactatga 52095204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 36463198 - 36463241
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  36463198 ttgtgaattcggactcaaaa-tcacactaatacaaactatgatgt 36463241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 46147197 - 46147241
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| | |||||||||||||||||| |||||||||||||    
T  46147197 ttgtgaattccgcctcaaaactcacaccaatgcaaactatgatgt 46147241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 50262489 - 50262533
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||    
T  50262489 ttgtgaattcagactcaaatttcacaccaatacaaactatgatgt 50262533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 52082465 - 52082508
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  52082465 ttgtgaattcggactcaaaa-tcacaccaatacaaattatgatgt 52082508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 54199710 - 54199753
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| |||||||||||||||| |||||||    
T  54199710 ttgtgaattcggactcaaaa-tcacaccaatacaaacgatgatgt 54199753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 47038219 - 47038261
Alignment:
Q  198 tgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||| |||||||||| ||||||||||||||||||||||||    
T  47038219 tgtgaatttggactcaaaa-tcacaccaatacaaactatgatgt 47038261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 48143415 - 48143371
Alignment:
Q  197 ttgtgaattc-ggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||    
T  48143415 ttgtgaattccggactcaaaa-tcacaccaatacaaactatgatgt 48143371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 41639799 - 41639755
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| ||||||||  ||||| ||||||||||||||||||    
T  41639799 ttgtgaattcagactcaaatttcacatcaatacaaactatgatgt 41639755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 28220022 - 28220072
Alignment:
Q  191 attttattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28220022 attttgttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 28220072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 37559666 - 37559711
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgtc 242  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  37559666 ttgtgaattcggactcaaaactcacaccaatataaactatgatgtc 37559711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 28223223 - 28223267
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  28223223 ttgtgaattcggactcaaaactcagaccaatacaaactatgatgt 28223267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 833972 - 834015
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  833972 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 834015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 8550586 - 8550629
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  8550586 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 8550629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 13137782 - 13137826
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||    
T  13137782 ttgtaaattcggactcaaaactcacaccaatacaaattatgatgt 13137826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 30476248 - 30476292
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||    
T  30476248 ttgtgaattcgaactcaaaactcacaccaatacaaactataatgt 30476292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 37503364 - 37503407
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  37503364 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 37503407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 40122003 - 40122045
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatg 240  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  40122003 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatg 40122045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 19753030 - 19752986
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||    
T  19753030 ttgtgaattcagactcaaatttcacaccaatacaaactatgatgt 19752986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 28265365 - 28265404
Alignment:
Q  201 gaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  28265365 gaattcggactcaaaa-tcacaccaatacaaactatgatgt 28265404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 45644160 - 45644203
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  45644160 ttgtgaattcggactcaaaa-tcacacaaatacaaactatgatgt 45644203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 4552454 - 4552493
Alignment:
Q  201 gaattcggactcaaaactcacaccaatacaaactatgatg 240  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  4552454 gaattcggactcaaatttcacaccaatacaaactatgatg 4552493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 44455531 - 44455485
Alignment:
Q  192 ttttattgtgaattcggactcaaaactcacaccaatacaaactatgat 239  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  44455531 ttttgttgtgaattcgtactcaaaa-tcacaccaatacaaactatgat 44455485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 1833874 - 1833833
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgat 239  Q
    |||||||||||||||||| | ||||||||||||||||||||||    
T  1833874 ttgtgaattcggactcaata-tcacaccaatacaaactatgat 1833833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 3846923 - 3846966
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  3846923 ttgtgaattcggactcaaaa-tcatactaatacaaactatgatgt 3846966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 10925588 - 10925549
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatg 237  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  10925588 ttgtgaattcggactcaaaa-tcacaacaatacaaactatg 10925549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 13659153 - 13659196
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||    
T  13659153 ttgtgaattcggactcaaaa-tcacatcaatacaaactataatgt 13659196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 31659604 - 31659561
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||||    
T  31659604 ttgtgaattcggactcaaaa-tcacaccaatataaaatatgatgt 31659561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 41361276 - 41361233
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||    
T  41361276 ttgtgaattcggactcaaaactctaaccaata-aaactatgatgt 41361233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 49918716 - 49918673
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||    
T  49918716 ttgtaaattcagactcaaaa-tcacaccaatacaaactatgatgt 49918673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 15213153 - 15213109
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  15213153 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 15213109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 41366417 - 41366463
Alignment:
Q  194 ttattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41366417 ttattgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 41366463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 3303474 - 3303516
Alignment:
Q  199 gtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  3303474 gtgaattcggactcaaatctcacaccaatacaaactatgatgt 3303516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 4743029 - 4743073
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||    
T  4743029 ttgtgaattcggactcaaatctcacaccaatacaaactataatgt 4743073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 6599331 - 6599288
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  6599331 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 6599288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 6674784 - 6674741
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  6674784 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 6674741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 5689633 - 5689590
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  5689633 ttgtgaattccgactcaaaa-tcacaccaatacaaactatgatgt 5689590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 12702433 - 12702476
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  12702433 ttgtgaattcggactcaaaa-tcacatcaatacaaactatgatgt 12702476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 30143706 - 30143663
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  30143706 ttgtgaattcagactcaaaa-tcacaccaatacaaactatgatgt 30143663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 43036786 - 43036745
Alignment:
Q  200 tgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||| ||||||||||||||||||||||||||  |||||||    
T  43036786 tgaatttggactcaaaactcacaccaatacaaaaaatgatgt 43036745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 4732024 - 4731981
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||    
T  4732024 ttgtgaattcgaactcaaaa-tcacaccaatacaaacaatgatgt 4731981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 19491505 - 19491548
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||    
T  19491505 ttgtgaattcggactcaaaactctaaccaata-aaactatgatgt 19491548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 6430494 - 6430450
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6430494 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 6430450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 14069635 - 14069679
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14069635 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 14069679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 14379663 - 14379707
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14379663 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 14379707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 18127013 - 18126969
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18127013 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 18126969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 23555408 - 23555364
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23555408 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 23555364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 26417683 - 26417641
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26417683 ttgtgaattcggactcaaaactcacaccaatacaaactatgat 26417641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 43864609 - 43864567
Alignment:
Q  199 gtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43864609 gtgaattcggactcaaaactcacaccaatacaaactatgatgt 43864567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 31732770 - 31732814
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  31732770 ttgtgaattcggactcaaaactcacaccagtacaaactatgatgt 31732814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 47675938 - 47675982
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  47675938 ttgtgaattcggacacaaaactcacaccaatacaaactatgatgt 47675982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 41648811 - 41648859
Alignment:
Q  192 ttttattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  41648811 ttttgttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 41648859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 47673749 - 47673790
Alignment:
Q  200 tgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  47673749 tgaattcggacacaaaactcacaccaatacaaactatgatgt 47673790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 2360774 - 2360818
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  2360774 ttgtgaatttggactcaaaattcacaccaatacaaactatgatgt 2360818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 4510341 - 4510385
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  4510341 ttgtgaattcggactcaaatttcacaccaatacaaactatgatgt 4510385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 4512183 - 4512227
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  4512183 ttgtgaattcggactcaaatttcacaccaatacaaactatgatgt 4512227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 19502545 - 19502501
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| |||||||||||||||| |||||||||||||||||    
T  19502545 ttgtgaattcagactcaaaactcacactaatacaaactatgatgt 19502501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 38671027 - 38671070
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  38671027 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 38671070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 41317240 - 41317284
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  41317240 ttgtgaattcgaactcaaatctcacaccaatacaaactatgatgt 41317284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 1114019 - 1113975
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| || |||||||||||| ||||||||||||||||||    
T  1114019 ttgtgaattccgaatcaaaactcacatcaatacaaactatgatgt 1113975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 4586528 - 4586484
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||    
T  4586528 ttgtgaattcggactcaaatctcacaccaatgtaaactatgatgt 4586484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 48489797 - 48489754
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  48489797 ttgtgaattcggactcaaaa-tcacaccaataccaactatgatgt 48489754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 4508497 - 4508540
Alignment:
Q  195 tattgtgaattcggactcaaaactcacaccaatacaaactatga 238  Q
    |||||||||||||| ||||||  |||||||||||||||||||||    
T  4508497 tattgtgaattcggtctcaaatttcacaccaatacaaactatga 4508540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 22270316 - 22270275
Alignment:
Q  200 tgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||  ||||| ||||||||||||||||||    
T  22270316 tgaattcggactcaaatttcacagcaatacaaactatgatgt 22270275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 27348188 - 27348140
Alignment:
Q  192 ttttattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||| |||||||||||||||||||| |||||| |||||||| ||||||||    
T  27348188 ttttgttgtgaattcggactcaaaa-tcacacaaatacaaattatgatgt 27348140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 25616221 - 25616178
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||| || |||||||| ||||||||||||||||||||||||    
T  25616221 ttgtgaatacgtactcaaaa-tcacaccaatacaaactatgatgt 25616178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 30814768 - 30814724
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||  |||||||| |||||| ||||||||    
T  30814768 ttgtgaattcggactcaaatttcacaccagtacaaaatatgatgt 30814724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 31105202 - 31105245
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| || ||||||||||||||||| ||||||||||||    
T  31105202 ttgtgaattcgaacacaaaactcacaccaata-aaactatgatgt 31105245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 36146214 - 36146257
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| | |||| |||||||||||||||||    
T  36146214 ttgtgaattcggactcaaaa-ttacacaaatacaaactatgatgt 36146257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 602905 - 602949
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  602905 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 602949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 26954093 - 26954136
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  26954093 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 26954136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 14521480 - 14521523
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  14521480 ttgtgaattcggactcaaaactcacaccaat-gaaactatgatgt 14521523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 3038727 - 3038772
Alignment:
Q  195 tattgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||||    
T  3038727 tattgtgaattcgaactcaaaa-tcagaccaatacaaactatgatgt 3038772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 17758400 - 17758355
Alignment:
Q  197 ttgtgaattcgg-actcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||    
T  17758400 ttgtgaattcgggactcaaatttcacaccaatacaaactatgatgt 17758355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 28137213 - 28137253
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatga 238  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  28137213 ttgtgaattcggtctcaaaa-tcacaccaatacaaactatga 28137253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 4160061 - 4160105
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4160061 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 4160105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 29813428 - 29813384
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29813428 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 29813384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 29196191 - 29196235
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  29196191 ttgtgaattcggactcaaatctcacaccaatacaaactatgatgt 29196235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 5236259 - 5236302
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  5236259 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 5236302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 22834809 - 22834852
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  22834809 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 22834852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 23391714 - 23391758
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  23391714 ttgtgaattcgaacacaaaactcacaccaatacaaactatgatgt 23391758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 23410133 - 23410177
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  23410133 ttgtgaattcggacacaaaactcacatcaatacaaactatgatgt 23410177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 39153170 - 39153210
Alignment:
Q  201 gaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  39153170 gaattcgggctcaaaactcacaccaatacaaactatgatgt 39153210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 9666272 - 9666313
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgat 239  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  9666272 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgat 9666313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 29811235 - 29811193
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgat 239  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  29811235 ttgtgaattcgaactcaaaactcacaccaatacaaaatatgat 29811193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 761209 - 761167
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  761209 ttgtgaattcggactcaaa--tcacaccaatacaaactatgatgt 761167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 44700280 - 44700328
Alignment:
Q  191 attttattgtgaattcggactcaaaactcacaccaatacaaactatgatg 240  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  44700280 attttgttttgaattcggactcaaaa-tcacaccaatacaaactatgatg 44700328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 40734863 - 40734820
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  40734863 ttgtgaattcggtctcaaaa-tcacaccaatacaaactatgatgt 40734820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 51399180 - 51399137
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  51399180 ttgtgaattcggactcaaaa-tcataccaatacaaactatgatgt 51399137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 21350813 - 21350843
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaat 227  Q
    |||||||||||||||||||||||||||||||    
T  21350813 ttgtgaattcggactcaaaactcacaccaat 21350843  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 6095392 - 6095437
Alignment:
Q  197 ttgtgaattcgg-actcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||    
T  6095392 ttgtgaattcgggactcaaatttcacaccaatacaaactatgatgt 6095437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 7764832 - 7764788
Alignment:
Q  197 ttgtgaattc-ggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  7764832 ttgtgaattccggactcaaaact-acaccaatacaaactatgatgt 7764788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 44330983 - 44330950
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaataca 230  Q
    ||||||||||||||||||||||||||||| ||||    
T  44330983 ttgtgaattcggactcaaaactcacaccagtaca 44330950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 31314806 - 31314763
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||| | ||||||||| ||||||||||||||||||||||||    
T  31314806 ttgtgaataccgactcaaaa-tcacaccaatacaaactatgatgt 31314763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 32891456 - 32891413
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||| ||||||||||||||||||||||||  ||||||||||||    
T  32891456 ttgtgacttcggactcaaaactcacaccaat-gaaactatgatgt 32891413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 40913644 - 40913608
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaac 233  Q
    |||||||||||||||||||  ||||||||||||||||    
T  40913644 ttgtgaattcggactcaaatttcacaccaatacaaac 40913608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 11690854 - 11690810
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11690854 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 11690810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 723549 - 723592
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  723549 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 723592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 11151397 - 11151441
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||    
T  11151397 ttgtgaattcgaactcaaaactcataccaatacaaactatgatgt 11151441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 24885951 - 24885908
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  24885951 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 24885908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 34139575 - 34139618
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  34139575 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 34139618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 36317815 - 36317859
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  36317815 ttgtgaatttggactcaaaactcacaccaatacaaacaatgatgt 36317859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 36987877 - 36987920
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  36987877 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 36987920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 42362711 - 42362668
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  42362711 ttgtgaattcggactcaaaa-tcacaccaatacaaactatgatgt 42362668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 2334220 - 2334263
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  2334220 ttgtgaattcagactcaaaa-tcacaccaatacaaactatgatgt 2334263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 6594806 - 6594849
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  6594806 ttgtgaatttggactcaaaa-tcacaccaatacaaactatgatgt 6594849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 17057171 - 17057214
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  17057171 ttgtgaattcggactcaaaa-tcacaccaatacaaaatatgatgt 17057214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 17085154 - 17085197
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  17085154 ttgtgaattcggactcaaaa-tcacaccaatacaaaatatgatgt 17085197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 29868235 - 29868191
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||    
T  29868235 ttgtgaattcggactcaaatttcacagcaatacaaactatgatgt 29868191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 33162256 - 33162299
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  33162256 ttgtgaattcggactcaaaa-tcacatcaatacaaactatgatgt 33162299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 36773924 - 36773881
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||    
T  36773924 ttgtgaattcggattcaaaa-tcacaccaatacaaactatgatgt 36773881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 14633630 - 14633673
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||||    
T  14633630 ttgtgatttcagactcaaaa-tcacaccaatacaaactatgatgt 14633673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 39285200 - 39285157
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||    
T  39285200 ttgtgaattcggacttaaaactcataccaatac-aactatgatgt 39285157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 1303 - 1347
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||| || |||||||||||||||||||| |||||||||    
T  1303 ttgtgaattcgaacacaaaactcacaccaatacaatctatgatgt 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 20218 - 20260
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||    
T  20218 ttgtgaattcggactcaa--ctcataccaatacaaactatgatgt 20260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 148914 - 148957
Alignment:
Q  197 ttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 241  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||    
T  148914 ttgtgaattcggactcaaaa-tcacatcaatacaaactataatgt 148957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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