View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_5 (Length: 423)
Name: NF10501_low_5
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 414
Target Start/End: Original strand, 48644759 - 48645166
Alignment:
| Q |
7 |
gcttaaggagaaaacgtgggaggaatgtgttttgacaaagagtcttaggattgttcacaagtttctatacgatgattgttcagtacgtgttagaaatggt |
106 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48644759 |
gcttaaggagaaaacttgggaggattgtgttttgacaaagagtcttaggattgttcacaagtttctatacgatgattgttcagtgcgtgttagaaatggt |
48644858 |
T |
|
| Q |
107 |
ggtggaagtggtggtggtttagttgtgcctgcaaatattggttctgccacggtggcaacagcagtaacccattagaggtagggtcgagccagcaagagaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644859 |
ggtggaagtggtggtggtttagttgtgcctgcaaatattggttctgccacggtggcaacagcagtaacccattagaggtagggtcgagccagcaagagaa |
48644958 |
T |
|
| Q |
207 |
gaatcaaaaatattatatagatcaaaccacaccactgacattacaatatttgacatttcacatatannnnnnnnnnnnnnnnnnncaccccactcccctt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48644959 |
gaatcaaaaatattatatagatcaaaccacaccactgacattacaatatttgacatttcacatatatttttttattttttgttttcaccccactcccctt |
48645058 |
T |
|
| Q |
307 |
cgttagagtcatgtcattttagtaaaggcttacttgtatacttactagcagttgctatacatatatataatgtcttgtttgattaaaactattggacagt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645059 |
cgttagagtcatgtcattttagtaaaggcttacttgtatacttactagcagttgctatacatatatataatgtcttgtttgattaaaactattggacagt |
48645158 |
T |
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| Q |
407 |
tttcatct |
414 |
Q |
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|||||||| |
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| T |
48645159 |
tttcatct |
48645166 |
T |
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