View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10501_low_50 (Length: 249)

Name: NF10501_low_50
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10501_low_50
NF10501_low_50
[»] chr4 (11 HSPs)
chr4 (1-242)||(33334130-33334360)
chr4 (3-188)||(45976128-45976315)
chr4 (4-111)||(10317103-10317208)
chr4 (41-111)||(8892660-8892729)
chr4 (4-97)||(53722019-53722110)
chr4 (59-110)||(3770909-3770960)
chr4 (44-111)||(31670142-31670208)
chr4 (4-83)||(43683731-43683808)
chr4 (59-110)||(44147090-44147141)
chr4 (59-110)||(44151625-44151676)
chr4 (4-111)||(27186154-27186263)
[»] chr6 (11 HSPs)
chr6 (5-182)||(17159610-17159789)
chr6 (1-100)||(7888209-7888308)
chr6 (130-242)||(7888096-7888210)
chr6 (5-116)||(17163640-17163752)
chr6 (4-111)||(17096314-17096419)
chr6 (41-111)||(17895763-17895832)
chr6 (4-111)||(8315543-8315649)
chr6 (4-111)||(8320082-8320187)
chr6 (41-111)||(14531827-14531896)
chr6 (27-145)||(21417106-21417224)
chr6 (42-97)||(17779964-17780018)
[»] chr2 (9 HSPs)
chr2 (5-182)||(29767953-29768132)
chr2 (5-176)||(26440387-26440559)
chr2 (5-56)||(22558544-22558595)
chr2 (4-111)||(8050851-8050956)
chr2 (44-111)||(12999504-12999570)
chr2 (59-110)||(36670570-36670621)
chr2 (59-110)||(36675118-36675169)
chr2 (4-111)||(8055404-8055509)
chr2 (20-85)||(27403696-27403761)
[»] chr7 (10 HSPs)
chr7 (1-150)||(13828101-13828251)
chr7 (5-111)||(733706-733811)
chr7 (5-98)||(8674977-8675068)
chr7 (4-111)||(35705646-35705752)
chr7 (59-110)||(7940122-7940173)
chr7 (59-110)||(7944675-7944726)
chr7 (4-102)||(47419627-47419723)
chr7 (4-97)||(27761409-27761500)
chr7 (59-111)||(22901221-22901273)
chr7 (59-97)||(27756911-27756949)
[»] chr5 (16 HSPs)
chr5 (1-184)||(33823894-33824070)
chr5 (26-111)||(20830368-20830452)
chr5 (41-111)||(32486025-32486094)
chr5 (46-111)||(19502362-19502426)
chr5 (4-111)||(30695305-30695410)
chr5 (41-111)||(26336845-26336915)
chr5 (26-111)||(20808680-20808764)
chr5 (20-109)||(43384980-43385067)
chr5 (59-110)||(7099413-7099464)
chr5 (59-110)||(7103982-7104033)
chr5 (59-110)||(12018798-12018849)
chr5 (59-110)||(12023356-12023407)
chr5 (59-110)||(16794175-16794226)
chr5 (59-110)||(16798736-16798787)
chr5 (4-97)||(40371789-40371880)
chr5 (4-102)||(10277216-10277312)
[»] chr8 (13 HSPs)
chr8 (4-111)||(42234734-42234839)
chr8 (4-152)||(41949814-41949962)
chr8 (4-111)||(33071930-33072035)
chr8 (4-111)||(28644574-28644679)
chr8 (4-110)||(43807524-43807628)
chr8 (4-110)||(43812083-43812187)
chr8 (59-110)||(197723-197774)
chr8 (59-110)||(202241-202292)
chr8 (59-110)||(312560-312611)
chr8 (59-110)||(317078-317129)
chr8 (59-111)||(30405860-30405912)
chr8 (4-111)||(30410369-30410474)
chr8 (27-70)||(31474662-31474704)
[»] chr3 (12 HSPs)
chr3 (4-111)||(9697598-9697705)
chr3 (41-111)||(43547772-43547842)
chr3 (59-98)||(755895-755934)
chr3 (4-111)||(11004443-11004548)
chr3 (44-111)||(21847162-21847228)
chr3 (44-111)||(21850252-21850318)
chr3 (59-110)||(54171963-54172014)
chr3 (4-150)||(9105287-9105433)
chr3 (59-110)||(54167383-54167434)
chr3 (64-98)||(755824-755858)
chr3 (4-102)||(39399171-39399267)
chr3 (5-89)||(53353037-53353119)
[»] scaffold0440 (2 HSPs)
scaffold0440 (41-110)||(7555-7623)
scaffold0440 (59-110)||(3047-3098)
[»] chr1 (4 HSPs)
chr1 (4-97)||(16588532-16588623)
chr1 (4-109)||(43591863-43591966)
chr1 (4-102)||(10504448-10504544)
chr1 (59-111)||(39793896-39793948)
[»] scaffold0044 (2 HSPs)
scaffold0044 (59-110)||(44904-44955)
scaffold0044 (59-110)||(49484-49535)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33334360 - 33334130
Alignment:
Q  1 ttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||    
T  33334360 ttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgtt------------acaagttggttagagttt 33334273  T
Q  101 agaaaataagagttagggttgtt-ctttacttgtgcttcaagtaacctaacacatgcttgttataagttcattccttgtacaattttcatatctcaataa 199  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33334272 agaaaataagagttagggttgttactttacttgtgcttcaagtaacctaacacatgcttgttataagttcattccttgtacaattttcatatctcaataa 33334173  T
Q  200 tacatttcattttatcaattctattcacttacgctttcatctc 242  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  33334172 tacatttcattttatcaattctattcacttacgctttcttctc 33334130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 45976315 - 45976128
Alignment:
Q  3 gttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag-ttta 101  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||||||||  |||||| ||||    
T  45976315 gttaattcaagtttacattagtggtaatcatgcttagttgattaatcacatcttg-ttttagtttgttttgaagtttgttacaagttttttagagtttta 45976217  T
Q  102 gaaaataagagttagggttgtt-ctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaattttca 188  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||    
T  45976216 gaaaataagagttagggttgttactttacttgtgcttcaagtaacctaacacttgcttgtatataagctcattccttgtacatttttca 45976128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 10317208 - 10317103
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  ||||| |||||||   | || ||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||| ||||     
T  10317208 ttaattcaagtttagtttagttataatcacaatcag-tgattaatcacactttg-ttgtagtttgttatgaagtttgttacaagtttgttagaggttagc 10317111  T
Q  104 aaataaga 111  Q
    ||||||||    
T  10317110 aaataaga 10317103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 8892729 - 8892660
Alignment:
Q  41 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||| || ||||||| |||| ||||||||    
T  8892729 tgattaatcacattttg-ttttagtttgttatgaagtttgttacaaatttgttagagattagcaaataaga 8892660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 53722019 - 53722110
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 97  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| |||||||    
T  53722019 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagag 53722110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 3770909 - 3770960
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  3770909 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 3770960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 31670142 - 31670208
Alignment:
Q  44 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  31670142 ttaatcacagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 31670208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 43683808 - 43683731
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgtta 83  Q
    ||||||||||||||  |||||||||||||   | || ||||||||||||||||| |||||||||||| ||||||||||||    
T  43683808 ttaattcaagtttattttagtgataatcacaatcag-tgattaatcacactttg-ttttagtttgttatgaagtttgtta 43683731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 44147090 - 44147141
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  44147090 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 44147141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 44151625 - 44151676
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  44151625 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 44151676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 27186154 - 27186263
Alignment:
Q  4 ttaattcaagtttacatt-agtgataatcatgtttagttgattaatcacactttgatttt-agttt-gttttgaagtttgttacaagttggttagagttt 100  Q
    ||||||||||||||  || |||||||||||   ||||| ||||||||||| |||| |||| ||||| ||| |||||||||||||||||| ||||||| ||    
T  27186154 ttaattcaagtttagttttagtgataatcacaattagt-gattaatcacattttgttttttagttttgttatgaagtttgttacaagtttgttagaggtt 27186252  T
Q  101 agaaaataaga 111  Q
    || ||||||||    
T  27186253 agcaaataaga 27186263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 17159610 - 17159789
Alignment:
Q  5 taattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttag--agtttag 102  Q
    ||||||||||||| |||||||||||||||| |||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||  | |||||    
T  17159610 taattcaagtttagattagtgataatcatgattagttgattgatcatactttg-ttttagtttgttttgacgtttgttacaagttggttagaaattttag 17159708  T
Q  103 aaaataagagttagggttgttctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaa 182  Q
     |||||||||| || ||||||  |||||||||||||||||||| |||||| |||| || |||||| |||||||||||||||    
T  17159709 gaaataagagtcagagttgttacttacttgtgcttcaagtaacataacacttgctcgtatataagctcattccttgtacaa 17159789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 7888308 - 7888209
Alignment:
Q  1 ttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  7888308 ttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaactttgttagagttt 7888209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 7888210 - 7888096
Alignment:
Q  130 ttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaatttt-catatctcaataatacatttcattttatcaattctattcac 227  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  7888210 ttgtgcttcaagtaacctaacacatgcttgtatataagctcattccttgtacaatttttcatatctcaataatacaattcattttatcaattctattcac 7888111  T
Q  228 ttacgctttcatctc 242  Q
    || | ||||| ||||    
T  7888110 ttgctctttcttctc 7888096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 17163640 - 17163752
Alignment:
Q  5 taattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttaga--gtttag 102  Q
    ||||||||||||| ||||||||| ||| || |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||    
T  17163640 taattcaagtttagattagtgatgatcgtgattagttgattgatcacactttg-ttttagtttgttttgaagtttgttacaagttggttagaagttttag 17163738  T
Q  103 aaaataagagttag 116  Q
     |||||||||||||    
T  17163739 gaaataagagttag 17163752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 17096419 - 17096314
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | || |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  17096419 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 17096322  T
Q  104 aaataaga 111  Q
    | ||||||    
T  17096321 agataaga 17096314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 17895832 - 17895763
Alignment:
Q  41 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  17895832 tgattaatcacatttt-attttagtttgttctgaagtttgttacaagtttgttagaggttagcaaataaga 17895763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 8315649 - 8315543
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| | |||||||||  ||  |||||||||||| |||||||||||||||||| ||||||| ||||     
T  8315649 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagt 8315551  T
Q  104 aaataaga 111  Q
    | ||||||    
T  8315550 agataaga 8315543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 8320187 - 8320082
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| ||||||| ||||     
T  8320187 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacaatatg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagt 8320090  T
Q  104 aaataaga 111  Q
    | ||||||    
T  8320089 agataaga 8320082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 14531896 - 14531827
Alignment:
Q  41 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    |||||||||||| |||| |||||||| ||| |||||||||||||| ||| ||||||| |||| ||||||||    
T  14531896 tgattaatcacattttg-ttttagttcgttatgaagtttgttacaggtttgttagaggttagcaaataaga 14531827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 21417224 - 21417106
Alignment:
Q  27 taatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttaga--gtttagaaaataagagttagggttgttc 124  Q
    |||||||  |||| ||||| || |||||||| |||||||| ||||||||||||||||||||||||||| |   ||||  ||||||| ||||  | ||||     
T  21417224 taatcataattagctgattgattacactttg-ttttagtt-gttttgaagtttgttacaagttggttacaagctttaagaaataagggttatagctgtta 21417127  T
Q  125 tttacttgtgcttcaagtaac 145  Q
     ||||||||||||||||||||    
T  21417126 cttacttgtgcttcaagtaac 21417106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 17779964 - 17780018
Alignment:
Q  42 gattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 97  Q
    ||||||||||| |||| |||||||||||| |||||||||||| ||||| |||||||    
T  17779964 gattaatcacattttg-ttttagtttgttatgaagtttgttaaaagtttgttagag 17780018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 29767953 - 29768132
Alignment:
Q  5 taattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag--tttag 102  Q
    |||||||||||||  ||||||||||||||| ||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |   |||||    
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttg-ttttagtttgttttaaagtttgttacaagttggttataagttttag 29768051  T
Q  103 aaaataagagttagggttgttctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaa 182  Q
     ||||||||||||| ||||||  |||||||||||||||||||| |||||  ||||||| |||||| |||||||||||||||    
T  29768052 gaaataagagttagagttgttacttacttgtgcttcaagtaacataacaattgcttgtatataagctcattccttgtacaa 29768132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 26440387 - 26440559
Alignment:
Q  5 taattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttaga--gtttag 102  Q
    |||||||| ||||  ||||| ||||||||| ||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||||||||   |||||    
T  26440387 taattcaaatttagtttagtaataatcatgattatttgattgatcacatttt-attttagtttgttttaaagtt-gttacaagttggttagaagctttag 26440484  T
Q  103 aaaataagagttagggttgttctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattcctt 176  Q
      |||||||| ||  || |||  |||||||||||||||||||| |||||| ||||||| |||||| |||||||||    
T  26440485 cgaataagagctaaagtagttacttacttgtgcttcaagtaacataacacttgcttgtatataagctcattcctt 26440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 22558595 - 22558544
Alignment:
Q  5 taattcaagtttacattagtgataatcatgtttagttgattaatcacacttt 56  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  22558595 taattcaagtttacattaatgataatcatgttttgttggttaatcacacttt 22558544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 8050851 - 8050956
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | | ||||||||||||| |||||||||||||||||| ||||||| ||||     
T  8050851 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattct-attttagtttgttatgaagtttgttacaagtttgttagaggttagt 8050948  T
Q  104 aaataaga 111  Q
    | ||||||    
T  8050949 agataaga 8050956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 12999570 - 12999504
Alignment:
Q  44 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  12999570 ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 12999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 36670570 - 36670621
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  36670570 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 36670621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 36675118 - 36675169
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  36675118 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 36675169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 8055404 - 8055509
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | | ||||||||||||| ||||||||||| |||||| ||||||| ||||     
T  8055404 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattct-attttagtttgttatgaagtttgttgcaagtttgttagaggttagt 8055501  T
Q  104 aaataaga 111  Q
    | ||||||    
T  8055502 agataaga 8055509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 27403761 - 27403696
Alignment:
Q  20 ttagtgataatcatgtttagttg-attaatcacactttgattttagtttgttttgaagtttgttaca 85  Q
    |||||| |||||||| |||| || ||| || |||||||| |||||||||||||||||||||||||||    
T  27403761 ttagtgttaatcatgattagctggattgattacactttg-ttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 13828251 - 13828101
Alignment:
Q  1 ttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagttt 100  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||| ||||||| |||||||||||||||||| |||||||| |    
T  13828251 ttgttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcatttt-gtttgttctgaagtttgttacaagtttgttagagtgt 13828153  T
Q  101 agaaaataagagttagggt-tgtt-ctttacttgtgcttcaagtaacctaac 150  Q
    |   ||||| ||||||||| |||| | || |||||||||||||  |||||||    
T  13828152 atctaataatagttagggtctgttacattgcttgtgcttcaagctacctaac 13828101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 733811 - 733706
Alignment:
Q  5 taattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaa 104  Q
    ||||||||||||| ||||||||||||||||||||  || |||||||||  || |  |||||||||| |||| |||||||||| || ||||||| |||| |    
T  733811 taattcaagtttagattagtgataatcatgtttaaatggttaatcacatattca-gttagtttgttatgaaatttgttacaattttgttagaggttagca 733713  T
Q  105 aataaga 111  Q
    |||||||    
T  733712 aataaga 733706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 8674977 - 8675068
Alignment:
Q  5 taattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagt 98  Q
    ||||||||||||| ||||||||||||||||||||  || ||||||||||||     |||||||||||||||||||||||| || | ||||||||    
T  8674977 taattcaagtttagattagtgataatcatgtttaaatggttaatcacactt--cagttagtttgttttgaagtttgttactaggttgttagagt 8675068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 35705646 - 35705752
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttt-tgaagtttgttacaagttggttagagtttag 102  Q
    ||||||||||||||  |||||||||||||   | || |||||||||||| |||| ||||||||||||| || ||||||||||||||| ||||||| ||||    
T  35705646 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacattttg-ttttagtttgtttatggagtttgttacaagtttgttagaggttag 35705743  T
Q  103 aaaataaga 111  Q
     ||||||||    
T  35705744 caaataaga 35705752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 7940173 - 7940122
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7940173 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7940122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 7944726 - 7944675
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7944726 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7944675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 47419723 - 47419627
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 102  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| ||||||||||||||||||  |||||| ||||    
T  47419723 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttcttagaggttag 47419627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 27761409 - 27761500
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 97  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| |||||||    
T  27761409 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttagtttgttatgaagtttgttacaagtttgttagag 27761500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 22901221 - 22901273
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  22901221 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 22901273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 27756911 - 27756949
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagag 97  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  27756911 ttttagtttgttatgaagtttgttacaagtttgttagag 27756949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 33823894 - 33824070
Alignment:
Q  1 ttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag--t 98  Q
    ||||||||||| |||||||||| ||| ||||| | |||||||||||||||||||| | |||             ||||||||||||||||||||||   |    
T  33823894 ttgttaattcatgtttacattaatgacaatcacgattagttgattaatcacacttcgtttt-------------agtttgttacaagttggttagaagtt 33823980  T
Q  99 ttagaaaataagagtta--gggttgtt-ctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaatt 184  Q
    |||||||||||||||||  |||||||| |||||||| ||||||||||||| |||||| ||||||| |||||| |||||||||||||||||    
T  33823981 ttagaaaataagagttatagggttgttactttacttctgcttcaagtaacataacacttgcttgtatataagctcattccttgtacaatt 33824070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 20830452 - 20830368
Alignment:
Q  26 ataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    ||||||||||||||||| ||||||||| || | ||| |||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  20830452 ataatcatgtttagttggttaatcacatttag-tttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataaga 20830368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 32486094 - 32486025
Alignment:
Q  41 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  32486094 tgattaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaga 32486025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 19502362 - 19502426
Alignment:
Q  46 aatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    ||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  19502362 aatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagaaaataaga 19502426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 30695305 - 30695410
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  30695305 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagt 30695402  T
Q  104 aaataaga 111  Q
    | ||||||    
T  30695403 atataaga 30695410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 26336915 - 26336845
Alignment:
Q  41 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    |||||||||||| |||| |||||||||||| ||| |||||||||| ||| ||||||| |||| ||||||||    
T  26336915 tgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttgttagaggttagcaaataaga 26336845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 20808764 - 20808680
Alignment:
Q  26 ataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    ||||||||||||||||| ||||||||| |||  ||| |||||||| ||||||| |||||||||| ||||||| |||  ||||||||    
T  20808764 ataatcatgtttagttggttaatcaca-tttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataaga 20808680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 43384980 - 43385067
Alignment:
Q  20 ttagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataa 109  Q
    ||||||||||||||  ||||| | ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||  |||| ||||||    
T  43384980 ttagtgataatcataattagtgg-ttaatcaca-tttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataa 43385067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 7099464 - 7099413
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7099464 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7099413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 7104033 - 7103982
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7104033 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7103982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 12018798 - 12018849
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  12018798 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 12018849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 12023356 - 12023407
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  12023356 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 12023407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 16794175 - 16794226
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  16794175 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 16794226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 16798736 - 16798787
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  16798736 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 16798787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 40371880 - 40371789
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 97  Q
    ||||||||||||||  |||||||||||||   | ||  ||||||||||| |||| |||||||||||| ||||| |||||||||||| |||||||    
T  40371880 ttaattcaagtttagtttagtgataatcacaatcaga-gattaatcacattttg-ttttagtttgttatgaagattgttacaagtttgttagag 40371789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 10277216 - 10277312
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 102  Q
    ||||||||||||||  |||||||||||||   ||||| | ||||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||||    
T  10277216 ttaattcaagtttagtttagtgataatcacaattagtgg-ttaatcacatttagattc-agtttgttatgaattttgttacaagttagttagagattag 10277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 42234839 - 42234734
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | || ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  42234839 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacactttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 42234742  T
Q  104 aaataaga 111  Q
    ||||||||    
T  42234741 aaataaga 42234734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 41949814 - 41949962
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttaga--gttta 101  Q
    |||||||||| |||  |||||||||||||   | || |||||||||||||| || |||||||||||||||||||||||||||||||||||| |   ||||    
T  41949814 ttaattcaagcttagtttagtgataatcacaatcag-tgattaatcacactctg-ttttagtttgttttgaagtttgttacaagttggttacaagtttta 41949911  T
Q  102 gaaaataagagttagggttgttctttacttgtgcttcaagtaacctaacac 152  Q
      ||||||| ||||  ||||||  ||||||||||||||||| || ||||||    
T  41949912 agaaataagggttatagttgttacttacttgtgcttcaagtgacataacac 41949962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 33071930 - 33072035
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | || ||||||||||||||||  |||||||||||| |||||||||||||||||| ||| ||| ||||     
T  33071930 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacacttt-cttttagtttgttatgaagtttgttacaagtttgttggaggttagc 33072027  T
Q  104 aaataaga 111  Q
    ||||||||    
T  33072028 aaataaga 33072035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 28644574 - 28644679
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  28644574 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 28644671  T
Q  104 aaataaga 111  Q
    | ||||||    
T  28644672 agataaga 28644679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 43807628 - 43807524
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| ||||||| ||||     
T  43807628 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 43807531  T
Q  104 aaataag 110  Q
    |||||||    
T  43807530 aaataag 43807524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 43812187 - 43812083
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| ||||||| ||||     
T  43812187 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 43812090  T
Q  104 aaataag 110  Q
    |||||||    
T  43812089 aaataag 43812083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 197774 - 197723
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  197774 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 197723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 202292 - 202241
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  202292 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 202241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 312611 - 312560
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  312611 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 312560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 317129 - 317078
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  317129 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 317078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 30405912 - 30405860
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  30405912 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataaga 30405860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 30410474 - 30410369
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || ||||| |||||| |||||||||||||||||| ||||||| ||||     
T  30410474 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttaatttgttatgaagtttgttacaagtttgttagaggttagt 30410377  T
Q  104 aaataaga 111  Q
    | ||||||    
T  30410376 agataaga 30410369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 31474704 - 31474662
Alignment:
Q  27 taatcatgtttagttgattaatcacactttgattttagtttgtt 70  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  31474704 taatcatgtttagttggttaatcaca-tttgattttagtttgtt 31474662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 9697598 - 9697705
Alignment:
Q  4 ttaattcaagtttacatt-agtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 102  Q
    ||||||||||||||  || |||||||||||   ||||| ||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||    
T  9697598 ttaattcaagtttagttttagtgataatcacaattagt-gattaatcacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttag 9697696  T
Q  103 aaaataaga 111  Q
     ||||||||    
T  9697697 caaataaga 9697705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 43547772 - 43547842
Alignment:
Q  41 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    |||||||| ||| |||| |||||||||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  43547772 tgattaattacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttaacaaataaga 43547842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 755895 - 755934
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagt 98  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  755895 ttttagtttgttttgaagtttgttacaagtttgttagagt 755934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 11004548 - 11004443
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | ||| || |||||||| |||| |||||| ||||| ||||| |||||||||||| ||||||| ||||     
T  11004548 ttaattcaagtttagtttagtgataatcacaatcagt-gaataatcacattttg-ttttagcttgttatgaagattgttacaagtttgttagaggttagc 11004451  T
Q  104 aaataaga 111  Q
    ||||||||    
T  11004450 aaataaga 11004443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 21847162 - 21847228
Alignment:
Q  44 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  21847162 ttaatcacagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 21847228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 21850252 - 21850318
Alignment:
Q  44 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  21850252 ttaatcacagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 21850318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 54172014 - 54171963
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  54172014 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 54171963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 9105287 - 9105433
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | | | ||||||||||| |||| ||| |||||||| |||||| ||||||||||| ||||||| |||      
T  9105287 ttaattcaagtttagtttagtgataatcacaatcaat-gattaatcacattttgcttt-agtttgttatgaagtatgttacaagtttgttagaggttaac 9105384  T
Q  104 aaataagagttag-ggttgtt-ctttacttgtgcttcaagtaacctaac 150  Q
    ||||||||  ||| | ||||| | || ||||||||||||| ||||||||    
T  9105385 aaataagatctagagtttgttacattgcttgtgcttcaagcaacctaac 9105433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 54167434 - 54167383
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||  |||||||    
T  54167434 ttttagtttgttatgaagtttgttacaagtttgttagaggttaccaaataag 54167383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 755824 - 755858
Alignment:
Q  64 gtttgttttgaagtttgttacaagttggttagagt 98  Q
    |||||||||||||||||||||||||| ||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagagt 755858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 39399267 - 39399171
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 102  Q
    ||||||||||||||  |||||||||||||   ||||| | ||||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||||    
T  39399267 ttaattcaagtttagtttagtgataatcacaattagtgg-ttaatcacatttagattc-agtttgttatgaattttgttacaagttagttagagattag 39399171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 53353119 - 53353037
Alignment:
Q  5 taattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 89  Q
    ||||||||||| | ||||||| |||||||| |||| ||||| || ||| |||| |||||||||  ||| ||||||||||||||||    
T  53353119 taattcaagtt-agattagtgttaatcatgattagatgattgattacattttg-ttttagtttaatttaaagtttgttacaagtt 53353037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 7555 - 7623
Alignment:
Q  41 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7555 tgattaatcacaatttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 3047 - 3098
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  3047 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 3098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 16588623 - 16588532
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 97  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| |||||||    
T  16588623 ttaattcaagtttagtttagtgataatcacaataagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagag 16588532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 43591966 - 43591863
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 103  Q
    ||||||||||||||  |||||||||||||   | || ||||||||| |||||| ||||||||||||| |||||||||||||||  | ||||||| ||||     
T  43591966 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcgcacttt-attttagtttgttatgaagtttgttacaatattgttagaggttagc 43591869  T
Q  104 aaataa 109  Q
    ||||||    
T  43591868 aaataa 43591863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 10504448 - 10504544
Alignment:
Q  4 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 102  Q
    ||||||||||||||  |||||||||||||   ||||| ||||||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||||    
T  10504448 ttaattcaagtttagtttagtgataatcacaattagt-gattaatcacatttagattc-agtttgttatgaattttgttacaagttagttagagattag 10504544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 39793896 - 39793948
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 111  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  39793896 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataaga 39793948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 44955 - 44904
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  44955 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 44904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 49535 - 49484
Alignment:
Q  59 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 110  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  49535 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 49484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University