View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_55 (Length: 244)
Name: NF10501_low_55
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 12544541 - 12544765
Alignment:
| Q |
1 |
tgacatcaatgagaaagaattctgtgtttcaagtaacgtacattttgaggaattagtgtttccttataagccaaatcctaatgcatcttaatctattcat |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12544541 |
tgacatcaatgagaaagaattctgtgtttcatgtaacgtacattttgaggaattagtgtttccttataagccaaatcctaatgcatcttaatctattcat |
12544640 |
T |
|
| Q |
101 |
ttggaatgcacttgaggcaagaaattgtagcccaagttacagtcaacaaagtgattctgtgccaccatctatctatctttgatccattccttgctgaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12544641 |
ttggaatgcacttgaggcaagaaattgtagcccaagttacagtcaacaaagtgattctgtgccacc----atctatctttgatccattccttgctgaacc |
12544736 |
T |
|
| Q |
201 |
aagtaacccagcaaatataattgaccatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12544737 |
aagtaacccagcaaatataattgaccatg |
12544765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 12539246 - 12539466
Alignment:
| Q |
1 |
tgacatcaatgagaaagaattctgtgtttcaagtaacgtacattttgaggaattagtgtttccttataagccaaatcctaatgcatcttaatctattcat |
100 |
Q |
| |
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||||| |||||| |||||| || ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
12539246 |
tgacaccaatgataaagaaatccatgtttcaagaaatgtacattttgaggaattagtgtttgcttataagccaaatcctaatgcatcttcatctattcat |
12539345 |
T |
|
| Q |
101 |
ttggaatgcacttgaggcaagaaattgtagcccaagttacagtcaacaaagtgattctgtgccaccatctatctatctttgatccattccttgctgaacc |
200 |
Q |
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| T |
12539346 |
ttggaatgcac-tgaggcaagaaattgtagcccaggtgacagtcaacaaggtgattctgtgccacc----atctatctttgatcctatcctttctgaacc |
12539440 |
T |
|
| Q |
201 |
aagtaacccagcaaatataattgacc |
226 |
Q |
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|||||| ||| |||||||||||||| |
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| T |
12539441 |
aagtaaaccaataaatataattgacc |
12539466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 30410595 - 30410629
Alignment:
| Q |
43 |
ttttgaggaattagtgtttccttataagccaaatc |
77 |
Q |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
30410595 |
ttttgaggaattagtgtttccttataagccaaatc |
30410629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 30410472 - 30410506
Alignment:
| Q |
43 |
ttttgaggaattagtgtttccttataagccaaatc |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
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|
| T |
30410472 |
ttttgaggaattagtgtttccttataagcaaaatc |
30410506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 30410351 - 30410383
Alignment:
| Q |
45 |
ttgaggaattagtgtttccttataagccaaatc |
77 |
Q |
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|
||||||||||||||||||||||||||| ||||| |
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|
| T |
30410351 |
ttgaggaattagtgtttccttataagcaaaatc |
30410383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 54752094 - 54752060
Alignment:
| Q |
43 |
ttttgaggaattagtgtttccttataagccaaatc |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
54752094 |
ttttgaggaattagtgtttccttataagccaaatc |
54752060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 54752217 - 54752183
Alignment:
| Q |
43 |
ttttgaggaattagtgtttccttataagccaaatc |
77 |
Q |
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|
||||||||||||||||||||||||||||||||||| |
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|
| T |
54752217 |
ttttgaggaattagtgtttccttataagccaaatc |
54752183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 54752338 - 54752306
Alignment:
| Q |
45 |
ttgaggaattagtgtttccttataagccaaatc |
77 |
Q |
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|
||||||||||||||||||||||||||| ||||| |
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|
| T |
54752338 |
ttgaggaattagtgtttccttataagcaaaatc |
54752306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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