View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_56 (Length: 242)
Name: NF10501_low_56
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_56 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 11551199 - 11551421
Alignment:
| Q |
20 |
attatcactagttttactcacctagaatacaagtatcttgctgcttgaggtttgctttcttatgaagttcaacttttagttgtatttgatcatctctaat |
119 |
Q |
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| T |
11551199 |
attatcactagttttactcacctagaatacaagtatcttgctgcttgaggtttgctttcttatgcagttcaacttttagttgtatttgatcatctctaat |
11551298 |
T |
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| Q |
120 |
tcctagaatctcattcaaataaccaaccataatttgtctcttctatatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagt |
219 |
Q |
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| T |
11551299 |
tcctagaatctcattcaaataaccaaccataatttgtctcttctatatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagt |
11551398 |
T |
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| Q |
220 |
ttcaggtcaccctttttctttca |
242 |
Q |
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| T |
11551399 |
ttcaggtcaccctttttctttca |
11551421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 85 - 242
Target Start/End: Complemental strand, 11562216 - 11562060
Alignment:
| Q |
85 |
agttcaacttttagttgtatttgatcatctctaattcctagaatctcattcaaataaccaaccataatttgtctcttctatatgtttgtttcgtttcaat |
184 |
Q |
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| T |
11562216 |
agttcaaattttagctatatttgatcatctctaattacttgactctcattcaaataacca-ccatagtttgtctcttctatatatttgtttcatttcaat |
11562118 |
T |
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| Q |
185 |
ttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttca |
242 |
Q |
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| T |
11562117 |
ttgaaattctactattttctcttggctgaaacagtttcaggtcaccctttttctttca |
11562060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 11546489 - 11546565
Alignment:
| Q |
165 |
tatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttc |
241 |
Q |
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| T |
11546489 |
tatgtttgtttcattttaatttgaaattatactattttctgttggctgaaacagtttcaggtcaccctttttctttc |
11546565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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