View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_58 (Length: 241)
Name: NF10501_low_58
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 52551584 - 52551370
Alignment:
| Q |
17 |
aaccactatatatacgagcttttaattcttcctaaaaaggaaattttgnnnnnnnacattaatgcgtaaatgtacttttagattttagttgctcataaca |
116 |
Q |
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| T |
52551584 |
aaccactatatatacgagcttttaattcttcctaaaaaggaaattttgtttttttacattaatgcgtaaatgtacttttagattttagttgctcataaca |
52551485 |
T |
|
| Q |
117 |
ccaaagcatcacaatagaggaggtattcatattagtccattaaattatttacttttaaatcaatggttataatcataattgtgcataataccactcactt |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52551484 |
ccaaagcatcacaatagaggaggtattcatagtagtccattaaattatttacttttaaatcaatggttataatcataattgtgcataataccactcactt |
52551385 |
T |
|
| Q |
217 |
tttaagtcacctatg |
231 |
Q |
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|||||||| |||||| |
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| T |
52551384 |
tttaagtctcctatg |
52551370 |
T |
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