View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_6 (Length: 403)
Name: NF10501_low_6
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 41364998 - 41365378
Alignment:
| Q |
10 |
atgaaagacacaaatcaaacaatggactcaaatgactctaaaattacatttgatgatgaatcatccctaagcttcacaggtacgcaaaagcaattgtcac |
109 |
Q |
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| T |
41364998 |
atgaaagacacaaatcaaacaatgaactcaaatgactctaaaattacatttgatgatgaatcatccctaagcttcacaggtacgcaaaagcaattgtcac |
41365097 |
T |
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| Q |
110 |
tccacgttcttcatgcaactcacaatctcgnnnnnnnnnnnnnnnnnnncaaaactaatgcgagtaattcagatccgcctggatcaagttaaagcactaa |
209 |
Q |
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| T |
41365098 |
tccacgttcttcatgcaactcacaatctcgttttcttttttcattttt-caaaactaatgcgggcaattcagatccgcctggatcaagttaaagcactaa |
41365196 |
T |
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| Q |
210 |
tcatcaaatcaattgtacccggattctttgatttcttcatcaagaatcttctcatcaaacacgattcttttgcgacacaatggctttcgtttcatgggtg |
309 |
Q |
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| T |
41365197 |
tcatcaaatcaattgtacccggattctttgatttcttcatcaagaatcttctcatcaaacacgattcttttgcgacacaatggctttcgtttcatgggtg |
41365296 |
T |
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| Q |
310 |
tctttgttattatggttttcttcttgcagggtgcaccaggacattcaagaatcggtgggattttgtgatctgaagatgtggg |
391 |
Q |
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| T |
41365297 |
tctttgttattatggttttcttcttgcagggtgcaccaggacattcaaaaatcggtgggattttgtgatctgaagatgtggg |
41365378 |
T |
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