View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_61 (Length: 240)
Name: NF10501_low_61
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 18717617 - 18717822
Alignment:
| Q |
24 |
tccatctccatttcctaactaactttccattttcaattt-cttcattttagactgttgcgatgaagttcatcatgaaacacggtaaaacggaaaaggata |
122 |
Q |
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| T |
18717617 |
tccatttccattttctaactaactttccattttcaattttcttccgtttagactgttgcgatgaagttcatcatgaaacacggtaaaacggaaaaggata |
18717716 |
T |
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| Q |
123 |
ttcataatttgagacaagaaattgaggtaattcgtttaatttattcatcaaattcgactttgttttaattaacgcgatctgattctgtgttttctctttg |
222 |
Q |
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| T |
18717717 |
ttcataatttgagacaagaaattgaggtaattcgtttaatttattcatcaatttcgactttgttttaattaacgcgatttgattctgtgttttctctttg |
18717816 |
T |
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| Q |
223 |
ttatga |
228 |
Q |
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|||||| |
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| T |
18717817 |
ttatga |
18717822 |
T |
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