View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_62 (Length: 240)
Name: NF10501_low_62
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_62 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 53 - 224
Target Start/End: Complemental strand, 119478 - 119307
Alignment:
| Q |
53 |
cacccacttcgtgaaaaagagaactcaacttcttcaaggcagaatagaagaagagttatatctgaaaagagagtttcacctccatttggcatgactaatg |
152 |
Q |
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| T |
119478 |
cacccacttcgtgaaaaagagaactcaacttcttcaaggcagaatagaagaagagttatatctgaaaagagagtttcacctccatttggcatgactaatg |
119379 |
T |
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| Q |
153 |
ctcaaagaaaatccatcaatacttttaactacacaacacctctggcagagattacaaatgctaaacaaattt |
224 |
Q |
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| T |
119378 |
ctcaaagaaaatccatcaatacttttaactacacaacacctctggcagagattacaaatgctaaacaaattt |
119307 |
T |
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Target: scaffold0028; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 120957 - 120898
Alignment:
| Q |
1 |
cacaaattaggctgaggcctcatctatttccacaacaccattacaatccaatcacccact |
60 |
Q |
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| T |
120957 |
cacaaatcaggttgaggcctcatctatttccacaacaccattacaatccaatcacccact |
120898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 23689886 - 23689824
Alignment:
| Q |
70 |
agagaactcaacttcttcaaggcagaatagaagaagagttatatctgaaaagagagtttcacc |
132 |
Q |
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| T |
23689886 |
agagaactcaacttctttaagagataatagaagaagagttctttttgaaaagagagcttcacc |
23689824 |
T |
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