View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_63 (Length: 240)
Name: NF10501_low_63
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_63 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 2246401 - 2246255
Alignment:
| Q |
94 |
cttcatttacactacctagataatgcaaggaaaacgttataattttgttattattttccctaaacagcaagaacttcccaaatcaattcaggatcaaaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246401 |
cttcatttacactacctagataatgcaaggaaaacgttataattttgttattattttccctaaacagcaagaacttcccaaatcaattcaggatcaaaag |
2246302 |
T |
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| Q |
194 |
atggcattcttgctaaggagcaatcttcaaactctgtttcctctgtc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246301 |
atggcattcttgctaaggagcaatcttcaaactctgtttcctctgtc |
2246255 |
T |
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