View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_64 (Length: 240)
Name: NF10501_low_64
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_64 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 49591302 - 49591524
Alignment:
| Q |
18 |
ttgttgccgttgtgtctctaccagcaatcacaaagttcaaaacaacgtctctcaaacttttgtcacttgcatggttttctcccaattcaatgaatcttga |
117 |
Q |
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| T |
49591302 |
ttgttgccgttgtgtctctaccagcaatcacaaagttcaaaacaacgtctctcaaacttttgtcacttgcatggttttctcccaattcaatgaatcttga |
49591401 |
T |
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| Q |
118 |
taatatatcattttttatctgtttttaataaggcaagagttatatgttaatataaatgttttaaaaacaaaaccagatatcaaacttgctagacctttgg |
217 |
Q |
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| T |
49591402 |
taatatatcattttttatctgtttttaataaggcaagagttatatgttaatataaatgttttaaaaacaaaaccagatatcaaacttgtgagacctttgg |
49591501 |
T |
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| Q |
218 |
tcatggttaagttgattcaatct |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
49591502 |
tcatggttaagttgattcaatct |
49591524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 7236721 - 7236554
Alignment:
| Q |
18 |
ttgttgccgttgtgtctctaccagcaatcacaaagttcaaaacaacgtctctcaaacttttgtcacttgcatggttttctcccaattcaatgaatcttga |
117 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7236721 |
ttgttgcagttgtgtctctaccagcaaccacaaagttcaaaacaacgtctcttaaacttttgtcagttgcatggttttctcccaattcaatgaatcttga |
7236622 |
T |
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| Q |
118 |
taatatatcattttttatctg-tttttaataaggcaagagttatatgttaatataaatgttttaaaaa |
184 |
Q |
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| T |
7236621 |
taatatatcatttttcatctgtttttttataagataagagttatatgttaatataaatgttttaaaaa |
7236554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 30876873 - 30876966
Alignment:
| Q |
37 |
accagcaatcacaaagttcaaaacaacgtctctcaaacttttgtcacttgcatggttttctcccaattcaatgaatcttgataatatatcattttt |
132 |
Q |
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||||||||| ||||| ||||||| ||| || || | ||||| ||| |||||| |||||||||||||| ||||||||| ||||||||| |||||| |
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| T |
30876873 |
accagcaattacaaacttcaaaataacctcgctga--cttttttcaattgcattgttttctcccaattatatgaatcttaataatatataattttt |
30876966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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